PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00037875001

Common Name

GSBRNA2T00037875001, LOC106390804

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 355aa MW: 39264 Da PI: 9.849

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00037875001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.5	1.5e-13	276	326	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+ + e+ ++ GSBRNA2T00037875001 276 RRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKVNQKLQGKQAEMMEM 326 69**************************************99665555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-11	272	337	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.335	274	325	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.84E-10	276	325	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.9E-13	276	325	No hit	No description
CDD	cd14707	3.49E-24	276	328	No hit	No description
Pfam	PF00170	2.1E-11	276	326	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	279	294	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MGTHINFNNL GGGGSNQMKP TDTPNPLARQ SSVYSLTFDE LQSTFCGPGK DLGSMNMDEL 60 LKSIWTAEEA QAMTSSAVAQ PNDGVNLQRQ GSLTLPRTIS QKTVDEVWKF LIAKDGDMGG 120 SSNVESNAPP GRQQTLGEMT LEDFMFRAGV VREDNNLSFN GGNDSMILNQ PQHQFQQQSH 180 PQQQHPHQGL PQTIFPKQGN VEFTAPVGMV NKGFTEAVNN SMNNDNGLAS FRREGVKIAA 240 TSPGTSSAEN NSLSPVPYVL NRGRRSNTGV EKVIERRQRR MIKNRESAAR SRARKQAYTL 300 ELEAEIEKLK KVNQKLQGKQ AEMMEMQKNE VNEPSKQPWG SKRQCLRRTL TGPW*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MGTHINFNNL GGGGSNQMKP TDTPNPLARQ SSVYSLTFDE LQSTFCGPGK DLGSMNMDEL  60
LKSIWTAEEA QAMTSSAVAQ PNDGVNLQRQ GSLTLPRTIS QKTVDEVWKF LIAKDGDMGG  120
SSNVESNAPP GRQQTLGEMT LEDFMFRAGV VREDNNLSFN GGNDSMILNQ PQHQFQQQSH  180
PQQQHPHQGL PQTIFPKQGN VEFTAPVGMV NKGFTEAVNN SMNNDNGLAS FRREGVKIAA  240
TSPGTSSAEN NSLSPVPYVL NRGRRSNTGV EKVIERRQRR MIKNRESAAR SRARKQAYTL  300
ELEAEIEKLK KVNQKLQGKQ AEMMEMQKNE VNEPSKQPWG SKRQCLRRTL TGPW*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and immatures siliques. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:11884679}.

Functional Description ? help Back to Top
Source	Description
UniProt	Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:11884679, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16463099}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00037875001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ971974	1e-162	JQ971974.1 Eutrema salsugineum abscisic acid responsive elements-binding factor 4 (ABF4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013686796.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1
Refseq	XP_022555302.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1
Swissprot	Q9M7Q2	1e-172	AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7
TrEMBL	A0A078JBE8	0.0	A0A078JBE8_BRANA; BnaCnng41320D protein
STRING	Bo3g073080.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19290.1	1e-154	ABRE binding factor 4

Link Out ? help Back to Top
Entrez Gene	106390804

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877] Muñiz García MN,Cortelezzi JI,Fumagalli M,Capiati DA Expression of the Arabidopsis ABF4 gene in potato increases tuber yield, improves tuber quality and enhances salt and drought tolerance. Plant Mol. Biol., 2018. 98(1-2): p. 137-152 [PMID:30143991]