PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00037466001
Common NameGSBRNA2T00037466001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BES1
Protein Properties Length: 310aa    MW: 33440.4 Da    PI: 9.6037
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00037466001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8222174.4e-67121522145
               DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 
                          +sgr+ptwkErEnnkrRERrRRai+akiy+GLR qGnyklpk++DnneVlkALc eAGw+vedDGttyrkgskp  ++++ g+ ++ s++
  GSBRNA2T00037466001  12 SSGRTPTWKERENNKRRERRRRAITAKIYSGLRGQGNYKLPKHCDNNEVLKALCLEAGWIVEDDGTTYRKGSKPI-ASDMLGTPTTFSTN 100
                          89*************************************************************************.************** PP

               DUF822  92 sslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145
                          ss+q s++ssa++sp++sy+ sp sssfpsps++d ++++    llp+l++ ++
  GSBRNA2T00037466001 101 SSIQASPQSSAFPSPAPSYHGSPVSSSFPSPSRYDGNPSS--YLLLPFLHNIAS 152
                          *************************************987..899999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.0E-6212136IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAAGGGGGGG SSSGRTPTWK ERENNKRRER RRRAITAKIY SGLRGQGNYK LPKHCDNNEV  60
LKALCLEAGW IVEDDGTTYR KGSKPIASDM LGTPTTFSTN SSIQASPQSS AFPSPAPSYH  120
GSPVSSSFPS PSRYDGNPSS YLLLPFLHNI ASSIPANLPP LRTSNSAPVT PPLSSPTSRG  180
SKRKLMTQQL PRHPLLFAIS APSSPTRRAG HQTPPTIPEC DESEESSFED SGRWINFQST  240
APSSPTFNLV KQTSMVIDMK RSDWGMSGMN INGSEFVFEN GTVKPWEGEM IHEVAVEDLE  300
LTLGGTKTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-261593372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-261593372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-261593372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-261593372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.98760.0seed
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00474DAPTransfer from AT4G36780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00037466001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0503941e-173AY050394.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds.
GenBankAY0973571e-173AY097357.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022575314.10.0BES1/BZR1 homolog protein 2-like
SwissprotQ94A431e-168BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBLA0A078JA820.0A0A078JA82_BRANA; BnaAnng18240D protein
TrEMBLA0A397KY120.0A0A397KY12_BRACM; Uncharacterized protein
STRINGBra017782.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115122333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36780.14e-80BES1/BZR1 homolog 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]