PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00037250001

Common Name

GSBRNA2T00037250001, LOC106420746

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 361aa MW: 39176 Da PI: 9.3384

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00037250001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.5	6.8e-39	65	126	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+sss GSBRNA2T00037250001 65 PQEKINCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSSS 126 6899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-25	64	114	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.5E-33	67	123	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.742	69	123	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	71	107	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MMNVKPMEQI MIPNNNTHQS NTPSIARPNT VLTSSGGVSA AGAIVSAGVS NSNNTSVVVE 60 RKSRPQEKIN CPRCNSTNTK FCYYNNYSLT QPRYFCKGCR RYWTEGGSLR NVPVGGSSRK 120 NKRSSSSNIL QTTPSSLGLT TTLPDLNPPI IFSNQIPNKS KGASQDLNML SFPVMQDQHV 180 HMSKFLQMHK MEGNGNMTHQ QPSSSSSLYG SSSSPVSALE LLRTGVNVSS RSGINSFMPS 240 GPMMDSSNNV MYTSSGFPTM VDYKTSNLSF STDHQGLGHN NNNNNNNNNN SSSDAHSDHH 300 QGRVLFSFGD QMKELSSSIT QEVDHDDNQQ QKSHGNNNNS SPNNGYWSGM FSTTGGGSSW 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MMNVKPMEQI MIPNNNTHQS NTPSIARPNT VLTSSGGVSA AGAIVSAGVS NSNNTSVVVE  60
RKSRPQEKIN CPRCNSTNTK FCYYNNYSLT QPRYFCKGCR RYWTEGGSLR NVPVGGSSRK  120
NKRSSSSNIL QTTPSSLGLT TTLPDLNPPI IFSNQIPNKS KGASQDLNML SFPVMQDQHV  180
HMSKFLQMHK MEGNGNMTHQ QPSSSSSLYG SSSSPVSALE LLRTGVNVSS RSGINSFMPS  240
GPMMDSSNNV MYTSSGFPTM VDYKTSNLSF STDHQGLGHN NNNNNNNNNN SSSDAHSDHH  300
QGRVLFSFGD QMKELSSSIT QEVDHDDNQQ QKSHGNNNNS SPNNGYWSGM FSTTGGGSSW  360
*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.14494	0.0	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular system of the mother plant, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00037250001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352859	0.0	AK352859.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-N20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013717038.1	0.0	dof zinc finger protein DOF2.5 isoform X3
Swissprot	Q9ZPY0	1e-179	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	A0A078GQ29	0.0	A0A078GQ29_BRANA; BnaC04g50910D protein
STRING	Bra039272.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2528	26	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.1	1e-144	Dof family protein

Link Out ? help Back to Top
Entrez Gene	106420746

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]