PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00036719001
Common NameGSBRNA2T00036719001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 367aa    MW: 41442.4 Da    PI: 7.5398
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00036719001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.7e-07209231123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C++Cgk F+r  nL+ H+r H
  GSBRNA2T00036719001 209 HYCQICGKGFKRDANLRMHMRAH 231
                          68*******************99 PP
2zf-C2H212.30.0005331346621
                          TTEEESSHHHHHHHHH CS
              zf-C2H2   6 CgksFsrksnLkrHir 21 
                          Cg++Fsrk+ L++H +
  GSBRNA2T00036719001 331 CGTRFSRKDKLTSHVS 346
                          **************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.61E-6207234No hitNo description
Gene3DG3DSA:3.30.160.603.5E-6209236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0028209231IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.632209236IPR007087Zinc finger, C2H2
PROSITE patternPS000280211231IPR007087Zinc finger, C2H2
SMARTSM00355220261294IPR015880Zinc finger, C2H2-like
SMARTSM0035555299321IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.6E-4321347IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355310327351IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MNQGGLIMNT GECSMSCCSE TNSNSTIYTN SMAAATRSSG DDISLSLLFN LSTIQDKVHE  60
IQSLVNFFLI SPSKNNQSSE STSSLAAANV ESLVQDIITA ASSMMLTCQN LQISTSDNNN  120
IDTSQTTDGM FMEFSQNFDP DHDFVQESST NLLGEREHVS LIDQSTQSLD WHSIQTTNPK  180
TDHRRFKSRT GSYEIVELSV EDLLAKYTHY CQICGKGFKR DANLRMHMRA HGDEYKTREA  240
LINPTSRDKN VEYSSLTRHY YSCPQHGCRW NQRHDKFQPL KSVICAKNHY KRSHCPKIYM  300
CRRCNVKHFS VLSDLRTHEK HCGDIKWVCS CGTRFSRKDK LTSHVSLFSG HSPAHEPLPQ  360
PPMISL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.214880.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00036719001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013713503.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
SwissprotQ0WT241e-169STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A078GK810.0A0A078GK81_BRANA; BnaC09g36180D protein
STRINGBo9g148110.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-162C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]