PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00035784001

Common Name

GSBRNA2T00035784001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 183aa MW: 21104.7 Da PI: 9.9543

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00035784001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.7	7.8e-11	108	164	4	58
XCHHHCHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKka..eieeLeekvkeLeaeNkaLkkeleelkkevak 58 ++r r+ kNRe+A rsR+RK++ +i eLe ++ L++eN +Lk + e+++ ++a+ GSBRNA2T00035784001 108 DRRHNRMTKNRESAARSRARKQEraYINELELEIVHLKKENARLKRQEEQMQLKMAE 164 78999**************963379*************999887777666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.7E-10	100	163	No hit	No description
SMART	SM00338	2.9E-6	105	171	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.3E-8	108	159	IPR004827	Basic-leucine zipper domain
CDD	cd14707	6.82E-22	109	161	No hit	No description
SuperFamily	SSF57959	1.93E-7	109	162	No hit	No description
PROSITE pattern	PS00036	0	113	127	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MTQVTMEEVW KDINLASLHP HRQLNIDHEP VLSNQTPNKS IFQDFLNKPL NQEPPPSSSS 60 THHGSLLAPP ATVISLNTHF IDTHFDESAM FGCFGKKRGQ DSDDSRGDRR HNRMTKNRES 120 AARSRARKQE RAYINELELE IVHLKKENAR LKRQEEQMQL KMAEATQHQT KKILQRSWTS 180 PF*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed on the flanks of the shoot apex. {ECO:0000269\|PubMed:23543784}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269\|PubMed:23543784}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00035784001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ177148	1e-37	GQ177148.1 Arabidopsis thaliana ecotype Ll-0 FDP gene, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013661483.1	1e-131	bZIP transcription factor 27-like isoform X1
Refseq	XP_013685465.1	1e-131	bZIP transcription factor 27-like isoform X1
Refseq	XP_013693795.1	1e-131	bZIP transcription factor 27-like isoform X1
Swissprot	Q7PCC6	2e-79	FDP_ARATH; bZIP transcription factor 27
TrEMBL	A0A3P6DQP6	1e-134	A0A3P6DQP6_BRAOL; Uncharacterized protein (Fragment)
STRING	Bo9g024710.1	1e-125	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1934	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17770.2	2e-67	basic region/leucine zipper motif 27

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Jang S,Li HY,Kuo ML Ectopic expression of Arabidopsis FD and FD PARALOGUE in rice results in dwarfism with size reduction of spikelets. Sci Rep, 2017. 7: p. 44477 [PMID:28290557] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]