PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00034156001
Common NameGSBRNA2T00034156001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 293aa    MW: 33402.4 Da    PI: 6.3836
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00034156001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.39.4e-47151432128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          +pGfrFhPtdeel+++yLk+kv+gk++++ ++i+ev++yk+eP+dL   +++k++++ewyfF++ +k++++++  nratk+gyWk+tg+d
  GSBRNA2T00034156001  15 APGFRFHPTDEELITYYLKRKVQGKPMRF-DAIREVNVYKHEPSDLGelSRLKTKDQEWYFFCPLEKRQNSSTVINRATKKGYWKKTGED 103
                          69*************************99.99**************6345899999********************************** PP

                  NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          k++++  +++l+g+ ktLvf++gr+pkg++t+Wv+ eyrl
  GSBRNA2T00034156001 104 KQIKRGgDDKLIGVVKTLVFHRGRSPKGNRTNWVIYEYRL 143
                          ****9867788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-517161IPR003441NAC domain
PROSITE profilePS5100550.36614161IPR003441NAC domain
PfamPF023651.6E-2616143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MADNDDAWAV MKPIAPGFRF HPTDEELITY YLKRKVQGKP MRFDAIREVN VYKHEPSDLG  60
ELSRLKTKDQ EWYFFCPLEK RQNSSTVINR ATKKGYWKKT GEDKQIKRGG DDKLIGVVKT  120
LVFHRGRSPK GNRTNWVIYE YRLVLKKLEI DSYVLCRVIR KEHAGPSTAC IYAPFSEQDW  180
DDDGGINEKS QQGKNLIELN EHVREFDIDE DPTTVDQDGN NSEPLTKGCL PRKRQLDSFG  240
SYNNSSQTTQ DAVSSVAATL EENEAEPFAT MGQVDALRAE NEELKKTNSN KG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-351416315170Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00034156001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013709370.10.0NAC domain-containing protein 78-like
SwissprotQ9SQX92e-72NAC50_ARATH; NAC domain containing protein 50
TrEMBLA0A078J8D90.0A0A078J8D9_BRANA; BnaCnng38230D protein
STRINGBra008980.1-P1e-165(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2348134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.23e-75NAC domain containing protein 50
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]