PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00033990001
Common NameGSBRNA2T00033990001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 295aa    MW: 33706.6 Da    PI: 5.3646
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00033990001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.8e-20121176155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr++  +g+WvAeIr+p++ +g  +kr +lg+f+ta eAa a+++a+ +++g
  GSBRNA2T00033990001 121 CRFRGVRQRV-WGKWVAEIREPVNqRGgNSKRLWLGTFDTASEAALAYDRAASAMYG 176
                          689*****99.**********888777677**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.86E-28121185No hitNo description
PfamPF008471.5E-13121176IPR001471AP2/ERF domain
PROSITE profilePS5103222.155122184IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-20122185IPR016177DNA-binding domain
SMARTSM003801.7E-32122190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-28122185IPR001471AP2/ERF domain
PRINTSPR003679.3E-10123134IPR001471AP2/ERF domain
PRINTSPR003679.3E-10150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEDDKMVACT VSQNPKKEKF LVYCSCFYIG ASRFSFSAYL FCCFCVYTLE KEHNGPNQSS  60
SASIEPSRRR RRAAEPVDTT LSRWVKEEEA EEGLKRTRRV QAKGSRKSCM RGKGGPENPV  120
CRFRGVRQRV WGKWVAEIRE PVNQRGGNSK RLWLGTFDTA SEAALAYDRA ASAMYGRYAR  180
LNFPDGLGNG QDDEMKKTDE AESSRSYWLE TYNVSETGNS VVDKKDGEDY LYEDCIELGQ  240
EKIENLGRMA DNEIVKSEED YMFDGFELDK GLLYNEPGYY HGGGFDPYLE HFRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-17123191670ATERF1
3gcc_A3e-17123191670ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.172170.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in xylem tissues, stigma, anthers and region where sepals and petals attach the peduncle. {ECO:0000269|PubMed:21069430}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid-inducible transcription. Involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:21069430}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00298DAPTransfer from AT2G38340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00033990001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) treatment (PubMed:11798174). Induced by salt, heat and drought stresses. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634722.11e-169PREDICTED: dehydration-responsive element-binding protein 2E
RefseqXP_013704026.11e-169dehydration-responsive element-binding protein 2E-like
RefseqXP_013705373.11e-169dehydration-responsive element-binding protein 2E-like
SwissprotO809176e-90DRE2E_ARATH; Dehydration-responsive element-binding protein 2E
TrEMBLA0A078JBN60.0A0A078JBN6_BRANA; BnaC04g53380D protein
STRINGBo4g027470.11e-168(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142491823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.12e-89ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]