PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00033098001 | ||||||||
Common Name | GSBRNA2T00033098001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 139aa MW: 15291.4 Da PI: 10.5945 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.5 | 4.6e-20 | 22 | 71 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr ++ +gr++AeIrdp++ ++r++lg+f+ta++Aa+a++aa+++++g+ GSBRNA2T00033098001 22 YRGVRKRP-WGRYAAEIRDPRK---KTRVWLGTFDTAQQAARAYDAAAREFRGA 71 9*******.**********843...6*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.8E-36 | 21 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.999 | 21 | 78 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.3E-14 | 22 | 70 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.17E-20 | 22 | 80 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.6E-33 | 22 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-23 | 22 | 80 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.3E-11 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-11 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MTKMVLKPDP NLTQSNAKEI PYRGVRKRPW GRYAAEIRDP RKKTRVWLGT FDTAQQAARA 60 YDAAAREFRG AKAKTNFPTS LELNVNDGGY SRSPSQSITV DSASPTVARL IPVARHVYLF 120 NMTAFPLAAT CGVQSESD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-22 | 16 | 88 | 9 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.10868 | 0.0 | microspore-derived embryo| seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00033098001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and by Alternaria brassicicola (locally and systemically), but only slightly by ethylene. Strong induction by wounding, cold or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF499716 | 9e-94 | AF499716.1 Thellungiella halophila ethylene responsive element binding factor 4-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009107000.1 | 1e-71 | PREDICTED: ethylene-responsive transcription factor 8 | ||||
Swissprot | O80340 | 8e-50 | ERF78_ARATH; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A078GM97 | 6e-98 | A0A078GM97_BRANA; BnaC03g69420D protein | ||||
STRING | Bo3g182770.1 | 6e-83 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 6e-43 | ethylene responsive element binding factor 4 |