PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00032967001

Common Name

GSBRNA2T00032967001, LOC106399506

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WOX

Protein Properties

Length: 252aa MW: 28526 Da PI: 10.1401

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00032967001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.9	2.4e-20	90	149	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+++Le l++ r+p+ae++e+ +++l +++ ++V++WFqN++a+e++ GSBRNA2T00032967001 90 TRWNPTQEQIRILEVLYKGgMRTPNAEQIEHVTSQLgkygKIEGKNVFYWFQNHKARERQ 149 7***************99************************************97 PP
2	Wus_type_Homeobox	115.3	2.9e-37	90	151	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi+iLe lyk G+rtPn+e+i+++t++L +yGkie+kNVfyWFQN+kaRerqkq GSBRNA2T00032967001 90 TRWNPTQEQIRILEVLYKGGMRTPNAEQIEHVTSQLGKYGKIEGKNVFYWFQNHKARERQKQ 151 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.928	85	150	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-12	86	154	IPR009057	Homeodomain-like
SMART	SM00389	2.0E-6	87	154	IPR001356	Homeobox domain
CDD	cd00086	4.27E-4	90	151	No hit	No description
Pfam	PF00046	6.0E-18	90	149	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.5E-7	91	149	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MKVHEFSNGF SSWEQQQESP SSLSCKRFRP LAPKLSGSPS SPPSSSSGVT SATFDLKSFI 60 KPDQAAPTKS HYSLEHKRDF SQVEMHPGGT RWNPTQEQIR ILEVLYKGGM RTPNAEQIEH 120 VTSQLGKYGK IEGKNVFYWF QNHKARERQK QKRNNLSLSC QGSLSTTSVS NASVTMKTRT 180 SSSTDFKREP MVMKELLEEN EYKRTCRSWG FENLKIESRR NINSSINATI ATTFNIDNVT 240 LELFPLHPEG R*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00032967001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013695437.1	0.0	WUSCHEL-related homeobox 4
Swissprot	Q6X7J9	1e-122	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A078GK79	0.0	A0A078GK79_BRANA; BnaC05g25380D protein
STRING	Bra032212.1-P	1e-173	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5980	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	1e-119	WUSCHEL related homeobox 4

Link Out ? help Back to Top
Entrez Gene	106399506

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]