PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00032865001 | ||||||||
Common Name | GSBRNA2T00032865001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 300aa MW: 33991.2 Da PI: 4.3777 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.1 | 3.1e-18 | 56 | 109 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k GSBRNA2T00032865001 56 KKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 109 5568999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129 | 1.9e-41 | 55 | 147 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlEkdy +Lk++yd+l+++ ++L++++e+L +e GSBRNA2T00032865001 55 EKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKTQYDSLRHNFDSLRRDNESLLQE 144 69*************************************************************************************999 PP HD-ZIP_I/II 91 lke 93 +++ GSBRNA2T00032865001 145 ISK 147 976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.27E-19 | 48 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.637 | 51 | 111 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.4E-17 | 54 | 115 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.7E-15 | 56 | 109 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.90E-15 | 56 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-19 | 58 | 118 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.1E-6 | 82 | 91 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 86 | 109 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.1E-6 | 91 | 107 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.9E-17 | 111 | 152 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 300 aa Download sequence Send to blast |
MMKRLRSSDS VGGLISLCHT SSTDEQSPRR YGSMLEGYDE EEEEEAITEE RGQTEKKRRL 60 SINQVKALEK NFELENKLEP ERKVKLAQEL GLQPRQVAVW FQNRRARWKT KQLEKDYGVL 120 KTQYDSLRHN FDSLRRDNES LLQEISKLKS KLNGEEEEEE NNAVTMESDF SVKEEEDSLP 180 ENITEPPSSP PELLEHSDSF NYRSFTDLRD LLPLKAAASS FAAAGSSDSS DSSAVMNEES 240 SSNVTVAPTA VPGGGFFQFV KMEQTEDHDD FLSGEEACGF FSDEQPPSLH WYSAVDHWT* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 103 | 111 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.2318 | 0.0 | flower| leaf| seed| stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00032865001 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY336103 | 0.0 | AY336103.1 Brassica napus homeodomain-leucine zipper protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009140353.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
Swissprot | P46668 | 1e-158 | ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6 | ||||
TrEMBL | A0A078GKD8 | 0.0 | A0A078GKD8_BRANA; BnaA04g12890D protein | ||||
STRING | Bra030238.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM545 | 28 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22430.1 | 1e-132 | homeobox protein 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|