PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00032864001 | ||||||||
Common Name | GSBRNA2T00032865001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 267aa MW: 30366.2 Da PI: 4.2494 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.3 | 2.6e-18 | 23 | 76 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k GSBRNA2T00032864001 23 KKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 76 5568999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129.3 | 1.5e-41 | 22 | 114 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlEkdy +Lk++yd+l+++ ++L++++e+L +e GSBRNA2T00032864001 22 EKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKTQYDSLRHNFDSLRRDNESLLQE 111 69*************************************************************************************999 PP HD-ZIP_I/II 91 lke 93 +++ GSBRNA2T00032864001 112 ISK 114 976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.17E-18 | 16 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.637 | 18 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.4E-17 | 21 | 82 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.98E-15 | 23 | 79 | No hit | No description |
Pfam | PF00046 | 1.4E-15 | 23 | 76 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-19 | 25 | 85 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.7E-6 | 49 | 58 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 53 | 76 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.7E-6 | 58 | 74 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.2E-17 | 78 | 119 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MLEGYDEEEE EEAITEERGQ TEKKRRLSIN QVKALEKNFE LENKLEPERK VKLAQELGLQ 60 PRQVAVWFQN RRARWKTKQL EKDYGVLKTQ YDSLRHNFDS LRRDNESLLQ EISKLKSKLN 120 GEEEEEENNA VTMESDFSVK EEEDSLPENI TEPPSSPPEL LEHSDSFNYR SFTDLRDLLP 180 LKAAASSFAA AGSSDSSDSS AVMNEESSSN VTVAPTAVPG GGFFQFVKME QTEDHDDFLS 240 GEEACGFFSD EQPPSLHWYS AVDHWT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 78 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.2318 | 0.0 | flower| leaf| seed| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00032864001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY336103 | 0.0 | AY336103.1 Brassica napus homeodomain-leucine zipper protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009140353.1 | 1e-165 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
Swissprot | P46668 | 1e-137 | ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6 | ||||
TrEMBL | A0A078GJS3 | 0.0 | A0A078GJS3_BRANA; BnaA04g12880D protein | ||||
TrEMBL | A0A078GKD8 | 0.0 | A0A078GKD8_BRANA; BnaA04g12890D protein | ||||
STRING | Bra030238.1-P | 1e-164 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM545 | 28 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 1e-113 | homeobox protein 6 |
Publications ? help Back to Top | |||
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