PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00032443001
Common NameGSBRNA2T00032443001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 347aa    MW: 39238.3 Da    PI: 8.0784
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00032443001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.31.7e-13264314555
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                          +r+rr++kNRe+A rsR+R++a++ eLe +  +L++eN++Lkk +ee  k+
  GSBRNA2T00032443001 264 RRQRRMIKNRESAARSRARRQAYTVELELELNQLTEENMKLKKIVEENDKK 314
                          79****************************************999987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-10257323IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.714262310IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.38E-9264311No hitNo description
PfamPF001708.1E-12264316IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.1E-12264315No hitNo description
PROSITE patternPS000360267282IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MHVHITRFIG LKTMPGPESE TSTFHVFNHD LQTQLQTYPQ ETAVEEHAPV GRQNSIMSLT  60
LDEIQMKSGK SFGAMNMDEL LANMWMTVEE NNGGGAGAQQ DGEKPTILPR QGSLSVPVPL  120
CKKTVEEVWF EIQNGVQQPP PSSIAGQNPD EDNRRQQTLG EITLEDFLVK AGVVQEPLKT  180
TMKISSSDFG YNPEFGVGLH CQTQNNYGDN RTVYNENRPF YSGMGESSSC MTGNGRSGQY  240
LTGLNAFRIQ KRIIDGPPEI LMERRQRRMI KNRESAARSR ARRQAYTVEL ELELNQLTEE  300
NMKLKKIVEE NDKKRRQEVM NRSTQITKEK NGDKLRRIRR MASAGW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.26380.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}.
Functional Description ? help Back to Top
Source Description
UniProtCould participate in abscisic acid-regulated gene expression during seed development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00032443001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150299.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 1
RefseqXP_009150300.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 1
SwissprotQ8RYD60.0AI5L1_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 1
TrEMBLA0A078F7P70.0A0A078F7P7_BRANA; BnaCnng04010D protein
STRINGBra019436.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116522230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44460.11e-177bZIP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]