PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00032435001

Common Name

GSBRNA2T00032435001, LOC106436336

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 318aa MW: 37609.9 Da PI: 6.7141

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00032435001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	79.1	6.4e-25	48	130	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e+++L+ +r+e+++++ ++k++k lWe v++km+++gf r+++qCk+kw+nl +ryk+++++e + ++++py+++++ GSBRNA2T00032435001 48 QWSLEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSKWKNLVTRYKACETTEPEA---IRQQFPYYNEIQ 130 7******************************************************************85...56689**986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	7.7E-4	45	107	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.31E-5	47	121	IPR009057	Homeodomain-like
CDD	cd12203	1.21E-21	47	109	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.8E-5	48	104	IPR009057	Homeodomain-like
Pfam	PF13837	2.9E-20	48	132	No hit	No description
PROSITE profile	PS50090	8.142	49	105	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MDQRNPFHHH HHHHHQHHHL IQQQQLPPPP QSTTAAMDPG GGGERIPQWS LEETKELLGI 60 REELDQTFME TKRNKLLWEV VAAKMADKGF ARTAEQCKSK WKNLVTRYKA CETTEPEAIR 120 QQFPYYNEIQ SIFTARMQRV LWSEATEAST SSKRKNHQFS SDEEEEEEAE EPNQSINEEL 180 VAFVETQEKV ITTSTCTNPR KRAKKGKGIT GSTKAETAGS TLKEILEDFM RQTVKMEKEW 240 RDAWEMKERE REKRETEWRR RMSELEEERS ATERRWMERE NERRLREEAR AQKRDTIIDI 300 LLSKLNKDKN DDQHQGF*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in roots and flower buds. {ECO:0000269\|PubMed:15044016}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269\|PubMed:15044016}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00032435001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY271677	0.0	AY271677.1 Arabidopsis thaliana transcription factor GT-3a (GT3A) mRNA, complete cds.
GenBank	BT028926	0.0	BT028926.1 Arabidopsis thaliana At5g01380 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013610158.1	0.0	PREDICTED: trihelix transcription factor GT-3a-like
Refseq	XP_013732747.1	0.0	trihelix transcription factor GT-3a
Swissprot	Q9SDW0	1e-143	TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBL	A0A078FAR2	0.0	A0A078FAR2_BRANA; BnaCnng03970D protein
TrEMBL	A0A0D3EIG8	0.0	A0A0D3EIG8_BRAOL; Uncharacterized protein
STRING	Bo9g186070.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2215	28	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	1e-132	Trihelix family protein

Link Out ? help Back to Top
Entrez Gene	106436336

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]