PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00032278001

Common Name

GSBRNA2T00032278001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 266aa MW: 28792.3 Da PI: 7.6149

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00032278001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00083	181	203	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ Fs+ L H+r+H GSBRNA2T00032278001 181 HECSICKAEFSSGQALGGHMRRH 203 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	5.9E-12	110	135	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.48E-9	110	133	No hit	No description
PROSITE profile	PS50157	10.45	111	138	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.049	111	133	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	113	133	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.48E-9	176	203	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.9E-4	178	205	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.3E-12	180	205	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.031	181	203	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.307	181	205	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	183	203	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MTSVHEETRL VLLVKGKRTK RQRSASPHMN AEAVSGVCSE EPSLEAREEG AGEVEFQGAT 60 EEDQDMANCL MLLSQGHKAN GSGDHSSTHK IDFLCKKKPV ASLGLGLEGV YQCQTCDKSF 120 HSFQALGGHR ASHKKPKLGE NVLKCHEKKS SSASAVETAK GSFLSLQVTS SDGSKKPEKT 180 HECSICKAEF SSGQALGGHM RRHRGLIVNA NATSSHHQES IRPKNFLELD LNLPAPEDES 240 KFVFASKDQI ILFTTASNSL IDCHH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00032278001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013721467.1	0.0	zinc finger protein ZAT5-like
TrEMBL	A0A078FAD7	0.0	A0A078FAD7_BRANA; BnaCnng02770D protein
STRING	Bra009525.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6347	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	1e-145	C2H2 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]