PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00030503001

Common Name

GSBRNA2T00030503001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 262aa MW: 29215.2 Da PI: 4.8499

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00030503001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.1	3.4e-37	34	92	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e+a +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rk+ +s GSBRNA2T00030503001 34 ETAPPCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNIPVGGGCRKRSRS 92 56678**************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-25	34	86	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.528	37	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-31	37	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MMFPYTAHNV CQRQFPSPEI EIPAKWKISY GHEETAPPCP RCASSNTKFC YYNNYSLSQP 60 RYFCKGCRRY WTKGGSLRNI PVGGGCRKRS RSRRQSIHKR FGPNENLPDG LISGSQSSPA 120 GSDIDLAAVF AQYVNAPSPS STDNTTGSDQ DSPVTTTTTT TNTHALNSLS WDICQETDVN 180 LGFYGEFNDL TNKIQEDERG VGHFLQEDQE EIFEFQGLLD DKDIQEILEC SFSEVPEQLI 240 SQGSFMINGH WSSTDLTTFG V*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	92	KRSRSR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00030503001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013651625.1	0.0	dof zinc finger protein DOF1.2-like
Refseq	XP_013651627.1	0.0	dof zinc finger protein DOF1.2-like
Swissprot	P68349	1e-147	DOF12_ARATH; Dof zinc finger protein DOF1.2
TrEMBL	A0A078J8B7	0.0	A0A078J8B7_BRANA; BnaA07g37300D protein
STRING	Bra012277.1-P	1e-177	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6462	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	1e-138	Dof family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]