PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00030132001
Common NameGSBRNA2T00030132001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 493aa    MW: 55128.7 Da    PI: 4.6081
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00030132001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.92.3e-1022901597
                         -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                         +l+l  +f+++h ++      l +   s + Wevkl  ++++    l++GW+eF+   +   gD++vF+++g++ f  +v v 
  GSBRNA2T00030132001 22 LLTLDDEFLRSHTKV------LLISEASDKIWEVKL--DGNR----LAGGWEEFAAVSNFSHGDVLVFRHNGEEIF--HVAVS 90
                         577888888888644......56666889*******..9999....***********************9998888..77665 PP
2B375.27.3e-24157254199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+ + +++++l+++rl l+++f      ++++++++ l +e+gr+W+++l+ + +sg++++t+GW +F++angL  gDf+ Fkl++ s++
  GSBRNA2T00030132001 157 FLRARVTPYSLTKDRLDLSRDFKFMSFDEHKKPFEIYLANEKGRKWTLRLSRNISSGAFYITRGWANFCSANGLSRGDFCYFKLSE-SGE 245
                          6677899**************9433344556899*****************9*******************************976.888 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                          ++v+ ++++
  GSBRNA2T00030132001 246 RPVLLLCSH 254
                          899999987 PP
3B3543e-17294393299
                          EEE-..-HHHHTT-E...E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   2 fkvltpsdvlksgrl...vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldg 86 
                          ++   +++ +k+g+l   +l+   ++e g+kk  s ++tl+d +gr+W  +l  +++sg+  ++++kGW+e+++ang++++D++v++l+ 
  GSBRNA2T00030132001 294 LTRKFTPSRFKTGQLyisMLSSGVLRESGIKK--SGEITLMDNDGRKWPSYLHKTGQSGGewCYIRKGWREMCEANGVDVNDSFVLELIC 381
                          55666788888888844444555566777774..559***************7755555577**************************99 PP

                          SSEE..EEEEE-S CS
                   B3  87 rsefelvvkvfrk 99 
                           +++++ +k+++k
  GSBRNA2T00030132001 382 -EDANPIFKLHSK 393
                          .888899998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.574893IPR003340B3 DNA binding domain
SMARTSM010194.9E-101193IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-92290IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-93490IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-17148259IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086316.384157254IPR003340B3 DNA binding domain
SMARTSM010191.2E-20157255IPR003340B3 DNA binding domain
PfamPF023623.4E-20157254IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-19157255IPR015300DNA-binding pseudobarrel domain
CDDcd100178.74E-17167253No hitNo description
Gene3DG3DSA:2.40.330.103.2E-14288388IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-14290384IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.9E-13293394IPR003340B3 DNA binding domain
PfamPF023621.4E-18293393IPR003340B3 DNA binding domain
PROSITE profilePS5086310.63293394IPR003340B3 DNA binding domain
CDDcd100171.86E-11322392No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MVVPPPKPSL FQLTFLTGDK PLLTLDDEFL RSHTKVLLIS EASDKIWEVK LDGNRLAGGW  60
EEFAAVSNFS HGDVLVFRHN GEEIFHVAVS SESDDDESDD TDDSESDESN DTDDSESDES  120
NDTDDSESDD SEDNDEGDSS LVNKSEKPEA DTSSDCFLRA RVTPYSLTKD RLDLSRDFKF  180
MSFDEHKKPF EIYLANEKGR KWTLRLSRNI SSGAFYITRG WANFCSANGL SRGDFCYFKL  240
SESGERPVLL LCSHESGNGH EDKEEEEECP EADAVKICSV GGCSNEKSTP SRFLTRKFTP  300
SRFKTGQLYI SMLSSGVLRE SGIKKSGEIT LMDNDGRKWP SYLHKTGQSG GEWCYIRKGW  360
REMCEANGVD VNDSFVLELI CEDANPIFKL HSKIKNKGKG NIVTSKKRAL HARTAEKTPG  420
VEIDGERGSK RGRTRGSQPE SCSVSDQVAN VRQSIQDTLD TIRHFRAELE TREKNLEASL  480
LEVDDLDSNH LI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186200KKPFEIYLANEKGRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in the reproductive meristem. {ECO:0000269|PubMed:10092172}.
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00030132001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0517720.0AF051772.1 Brassica oleracea var. botrytis reproductive meristem gene 1 (REM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022546338.10.0B3 domain-containing protein REM1-like
SwissprotO650980.0REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLA0A078J9S50.0A0A078J9S5_BRANA; BnaA01g34820D protein
STRINGBra011285.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-146B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]