PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00030129001 | ||||||||
Common Name | GSBRNA2T00030129001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 299aa MW: 32677.1 Da PI: 10.474 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97 | 1.2e-30 | 222 | 279 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+++WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +dp ++++tYegeH+h+ GSBRNA2T00030129001 222 DEFSWRKYGQKPIKGSPHPRGYYKCSTFrGCPARKHVERALDDPAMLIVTYEGEHHHK 279 99***********************8766****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 8.0E-17 | 169 | 218 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.6E-32 | 208 | 280 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.826 | 215 | 281 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-26 | 218 | 280 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.1E-37 | 220 | 280 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-26 | 222 | 279 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MAVDLMRFPK MDDQKAIQEA ASQGLQSMEH LIRVLSTNRP EQQSNVDCSE ITDFTVSKFK 60 TVISLLNRTG HARFRRGPIV KTAQPEAPVV SQPARATTSL PPSRPSVTLD FTKPSIFGSN 120 SKSSELDSSF MTSALTGDGS VSKGSSIFAP SQTVTSSGKP PLAGGQPYRK RCIEHEHSQN 180 FSGKISGSGH GKCHCKKSRK NRPKRTVRVP AISSKIADIP PDEFSWRKYG QKPIKGSPHP 240 RGYYKCSTFR GCPARKHVER ALDDPAMLIV TYEGEHHHKQ SPMQMNVSGV NDLVFASA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-20 | 208 | 282 | 2 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.28119 | 0.0 | microspore-derived embryo| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00464 | DAP | Transfer from AT4G31550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00030129001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430079 | 0.0 | KF430079.1 Brassica rapa WRKY transcription factor 74 (WRKY74) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013650206.1 | 0.0 | probable WRKY transcription factor 11 isoform X1 | ||||
Swissprot | Q9SV15 | 1e-171 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A078J443 | 0.0 | A0A078J443_BRANA; BnaA01g34790D protein | ||||
STRING | Bra011282.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2508 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 1e-173 | WRKY DNA-binding protein 11 |