PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00029882001

Common Name

GSBRNA2T00029882001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 189aa MW: 21168.6 Da PI: 6.7278

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00029882001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.3	1.9e-09	57	102	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 + rr NReA r++R++Kka+++ Le++v+ L++ N+ L +l+ GSBRNA2T00029882001 57 SNKRRSCGNREAVRKYREKKKARTAYLEDEVQRLQSMNEFLLRKLQ 102 67899999*******************************9988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.9E-7	52	120	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.5E-12	53	120	No hit	No description
Pfam	PF07716	1.4E-15	53	102	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.082	55	121	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.0E-7	56	103	No hit	No description
CDD	cd14686	4.25E-10	65	103	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042538	Biological Process	hyperosmotic salinity response
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MDGEEVEAWA RASGGCSHTH SCNPPGPEDA SHSHTCFHTH THLIIPDSQE NGHSDSSNKR 60 RSCGNREAVR KYREKKKART AYLEDEVQRL QSMNEFLLRK LQSQAIVEAE IVRLRTLLVE 120 MQGTMNDELG GFSFQKQCNG SGFVFKEDGC NVATRNMICE VARVECEEGK TLHEPVHSFV 180 PHSPPFSR*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young leaves and cauline leaves. {ECO:0000269\|PubMed:19248824}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of salt stress response. Functions as a negative transcriptional regulator of salt stress acclimation response by regulating cation homeostasis (PubMed:18703123, PubMed:19248824). Regulates negatively the expression of genes contributing to ion and osmotic homeostasis during salt stress, such as the Na(+) transporter HKT1, the Na(+)/H(+) antiporter SOS1, the aquaporin PIP2-1 and the glutamine synthetase GLN1-3. In addition, targets genes with functions in plant growth and development, such as argonaute 4 (AGO4) and cyclophilin 19 (CYP19) (PubMed:19248824). {ECO:0000269\|PubMed:18703123, ECO:0000269\|PubMed:19248824}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00029882001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress (PubMed:18703123, PubMed:19248824). Induced by osmotic stress (PubMed:19248824). {ECO:0000269\|PubMed:18703123, ECO:0000269\|PubMed:19248824}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117629	1e-159	AK117629.1 Arabidopsis thaliana At3g51960 mRNA for putative bZip transcription factor Atbzip24, complete cds, clone: RAFL17-28-M01.
GenBank	BT005422	1e-159	BT005422.1 Arabidopsis thaliana clone U50385 putative bZIP family transcription factor (At3g51960) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013631502.1	1e-141	PREDICTED: uncharacterized protein LOC106337035
Swissprot	Q8GTS1	1e-107	BZP24_ARATH; Basic leucine zipper 24
TrEMBL	A0A078J7J5	1e-139	A0A078J7J5_BRANA; BnaCnng36700D protein
TrEMBL	A0A3P6C8D1	1e-139	A0A3P6C8D1_BRAOL; Uncharacterized protein
STRING	Bra033464.1-P	1e-129	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15172	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51960.1	2e-97	basic leucine zipper 24

Link Out ? help Back to Top
Entrez Gene	106390727

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]