PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00028477001 | ||||||||
Common Name | GSBRNA2T00028477001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 271aa MW: 29760.6 Da PI: 8.3253 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.2 | 1.2e-17 | 122 | 176 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Lee F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k GSBRNA2T00028477001 122 RKKLRLTKQQSVLLEENFKMHSTLNPKQKQALARQLSLRPRQVEVWFQNRRARTK 176 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 118.8 | 3e-38 | 122 | 211 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k+q+ lLEe+F+++++L+p++K++lar+L l+prqv+vWFqnrRARtk+kq+++d+e+Lk+++++l++en+rL+ke ++L+ + GSBRNA2T00028477001 122 RKKLRLTKQQSVLLEENFKMHSTLNPKQKQALARQLSLRPRQVEVWFQNRRARTKLKQTDVDCEFLKKCCETLTDENRRLQKELQDLK-A 210 69*************************************************************************************9.5 PP HD-ZIP_I/II 91 l 91 l GSBRNA2T00028477001 211 L 211 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00221 | 0 | 38 | 46 | IPR022357 | Major intrinsic protein, conserved site |
SuperFamily | SSF46689 | 2.52E-17 | 118 | 179 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.698 | 118 | 178 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.7E-13 | 120 | 182 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.7E-15 | 122 | 176 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.90E-15 | 122 | 179 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-16 | 122 | 176 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 153 | 176 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 5.3E-9 | 178 | 212 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 6.6E-25 | 178 | 221 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006810 | Biological Process | transport | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005215 | Molecular Function | transporter activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MGLDDSCNTG LVLGLGLSPT HNSYNYAIKK SSATVDHHVN PSLTLSLSGE SYKVEKTVSG 60 AGDQIYRQTS SHSGISSFSS GRIKREREVC GDGEEEAEET EKRVVCSSVR DDHEDEEGFS 120 ARKKLRLTKQ QSVLLEENFK MHSTLNPKQK QALARQLSLR PRQVEVWFQN RRARTKLKQT 180 DVDCEFLKKC CETLTDENRR LQKELQDLKA LKMSQPFYMH MPPATLMVCP SCERLGGGVA 240 GGGRGSTVAV DGGTAKGAFS IPFINPSAAC * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 178 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.23528 | 8e-72 | flower| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00028477001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ441254 | 0.0 | AJ441254.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009109392.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 1e-141 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A078J6J3 | 0.0 | A0A078J6J3_BRANA; BnaAnng16680D protein | ||||
STRING | Bra010612.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1671 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 1e-132 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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