PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00028229001
Common NameGSBRNA2T00028229001, LOC106354298
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family EIL
Protein Properties Length: 588aa    MW: 66037.5 Da    PI: 4.9569
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00028229001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3440.61.4e-134414031351
                          XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasds 90 
                          e+l++rmwkd+++lkr+ker+k   + ++a t++   +k+++qa+rkkmsraQDgiLkYMlk mevc+++GfvYgiipekgkpv+g+sd+
  GSBRNA2T00028229001  41 EDLERRMWKDRVRLKRIKERQKGDSQGAQA-TKEGPPKKISDQAQRKKMSRAQDGILKYMLKLMEVCKVRGFVYGIIPEKGKPVSGSSDN 129
                          89*********************9988877.888899***************************************************** PP

                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HH CS
                 EIN3  91 LraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelw 180
                          +raWWkekv+fd+ngpaai+ky+ ++l++++++++    ++++  l++lqD+tlgSLLs+lmqhcdppqr++plekg++pPWWPtGke+w
  GSBRNA2T00028229001 130 IRAWWKEKVKFDKNGPAAIAKYEEECLAFGKSDGN----RNSQFVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPWWPTGKEEW 215
                          *****************************987777....77999********************************************** PP

                          HHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX...XX.. CS
                 EIN3 181 wgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah...ss.. 265
                          w +lgl+++q+ ppy+kphdlkk+wkv+vLtavi+hmsp+i++i++++rqsk+lqdkm+akes+++l+vlnqee+++++ s++   s+  
  GSBRNA2T00028229001 216 WVKLGLPQNQS-PPYRKPHDLKKMWKVGVLTAVINHMSPDIAKIKRHVRQSKCLQDKMTAKESAIWLAVLNQEESLIQQPSSDngtSNvt 304
                          **********9.9**********************************************************************6542278 PP

                          ...XXXX....XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX.......XXXXXXXXXXXXXXXXXX.XXX......XXXXXXX.XXX CS
                 EIN3 266 ...slrk....qspkvtlsceqkedvegkkeskikhvqavktta.......gfpvvrkrkkkpsesakv.sskevsrtcqssqfrgsete 340
                                +    +++k+++++++++dv+g++e + + ++++++++       + pv ++ k+++++++k   +++ + + q +q ++ e +
  GSBRNA2T00028229001 305 ethR--RgnnaDRRKTVVNSDSDYDVDGTEEASGSVSSKDSRRNqvpaatsQQPVRDQDKAEKHKRRKRpRIRSGTVNVQDEQQPEAEER 392
                          7540..3344588899999999*****999999999999988887888877555555555444444433123344578899999999*** PP

                          XXXXXXXXXXX CS
                 EIN3 341 lifadknsisq 351
                          ++++d+n+++ 
  GSBRNA2T00028229001 393 NVIPDMNHVEA 403
                          ******99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.3E-12641288No hitNo description
Gene3DG3DSA:1.10.3180.103.0E-71164296IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167686.54E-61169291IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042762Biological Processregulation of sulfur metabolic process
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MGGGDLAMSV ADIRMENEQP DDLASDNVAE IDVSDEEIDA EDLERRMWKD RVRLKRIKER  60
QKGDSQGAQA TKEGPPKKIS DQAQRKKMSR AQDGILKYML KLMEVCKVRG FVYGIIPEKG  120
KPVSGSSDNI RAWWKEKVKF DKNGPAAIAK YEEECLAFGK SDGNRNSQFV LQDLQDATLG  180
SLLSSLMQHC DPPQRKYPLE KGTPPPWWPT GKEEWWVKLG LPQNQSPPYR KPHDLKKMWK  240
VGVLTAVINH MSPDIAKIKR HVRQSKCLQD KMTAKESAIW LAVLNQEESL IQQPSSDNGT  300
SNVTETHRRG NNADRRKTVV NSDSDYDVDG TEEASGSVSS KDSRRNQVPA ATSQQPVRDQ  360
DKAEKHKRRK RPRIRSGTVN VQDEQQPEAE ERNVIPDMNH VEAPMLDYNI NGATHHLEEG  420
VLEPNISLGP EENGLELVVP EFDTNYTYLP PVDGQAMMPV DERPMLYGAN PNQELQFGSG  480
YNYYNPSAVF VHNQEEDLIH TQIEMNSQAP PHSNGFDAQG GVLQPHGNEE VGVAGRDMPP  540
QFQSDQDKLL DSNILSPFND LPFDSSTFYS GFDTFGAFDD DYSWFGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A3e-841682999140ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00233DAPTransfer from AT1G73730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00028229001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013649660.10.0ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231160.0EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A078J8L30.0A0A078J8L3_BRANA; BnaA07g39030D protein
STRINGBra015970.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46582548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.10.0ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  3. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  4. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  5. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]