PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00027496001
Common NameGSBRNA2T00027496001, LOC106400524
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 265aa    MW: 29778.6 Da    PI: 6.2481
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00027496001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.93.1e-26143203259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          dD ++WrKYGqK++ gs+fpr+YYrCt++   +Cp+kk+v+r +edp ++ +tY+++H+++
  GSBRNA2T00027496001 143 DDNHTWRKYGQKDILGSKFPRAYYRCTHEklyKCPAKKQVQRLDEDPYTFCVTYRSSHTCH 203
                          8***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-26137203IPR003657WRKY domain
SuperFamilySSF1182907.06E-24140204IPR003657WRKY domain
SMARTSM007744.9E-32142204IPR003657WRKY domain
PfamPF031061.3E-23143203IPR003657WRKY domain
PROSITE profilePS5081119.577143200IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEEIMSMIFS GINLVKELEF CISAQESPES LSTSLGSVST LFGDANERLK ILLARRNAYV  60
LTQPEPKPVP MSDLDQMLMQ QIEYGLMQDY SLRDGVMQGV RNIDSGPSCG FSTPRPRRRK  120
KNEEEETVFV AAARMGNMDT PPDDNHTWRK YGQKDILGSK FPRAYYRCTH EKLYKCPAKK  180
QVQRLDEDPY TFCVTYRSSH TCHFFTTSPI PSTANTATTD GHYGSTVVNM AEALFGNLDS  240
VVPFGEPYFN YRSLFHGRGG DGDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-19143202968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115119PRRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00027496001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635595.10.0PREDICTED: WRKY transcription factor 55-like
SwissprotQ9SHB52e-83WRK55_ARATH; WRKY transcription factor 55
TrEMBLA0A078J5N80.0A0A078J5N8_BRANA; BnaC04g55610D protein
TrEMBLA0A0D3BXJ10.0A0A0D3BXJ1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C9D90.0A0A3P6C9D9_BRAOL; Uncharacterized protein
STRINGBo4g114050.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-71WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]