PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00026595001 | ||||||||
Common Name | GSBRNA2T00026595001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 232aa MW: 26497.7 Da PI: 10.369 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 27 | 9.5e-09 | 147 | 170 | 4 | 27 |
XCHHHCHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkae 27 ++r +r++kNRe+A rsR+RK++ GSBRNA2T00026595001 147 DRRHKRMIKNRESAARSRARKQEC 170 799*******************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.6E-11 | 139 | 211 | No hit | No description |
SMART | SM00338 | 1.3E-5 | 144 | 215 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.646 | 146 | 209 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.9E-6 | 148 | 204 | No hit | No description |
CDD | cd14707 | 1.12E-20 | 148 | 216 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 151 | 166 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MLSSAKHKIN HSAFSVSSSS SSLPHSYSQA KNMTQVTMEE VWKDINLASL HQHRQLNIDH 60 EPMLSNQNPN NSIFKDFLNK PLNQEPQPLP PSSSSSTLHR SLLPPPPPET VLSLNPHSIN 120 THFDESARFG CFGKKRGGQE SDESRGDRRH KRMIKNRESA ARSRARKQEC LSPYFSPPYQ 180 LHAYTNELEL AISHLQKENA RLKRQEEQLK MAEATQHQTK RKLQRSWTTP F* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed on the flanks of the shoot apex. {ECO:0000269|PubMed:23543784}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00026595001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ177148 | 2e-43 | GQ177148.1 Arabidopsis thaliana ecotype Ll-0 FDP gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018510840.1 | 1e-131 | PREDICTED: bZIP transcription factor 27 isoform X2 | ||||
Swissprot | Q7PCC6 | 3e-81 | FDP_ARATH; bZIP transcription factor 27 | ||||
TrEMBL | A0A078GCZ8 | 1e-169 | A0A078GCZ8_BRANA; BnaA07g03000D protein | ||||
STRING | Bra002090.1-P | 1e-130 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17770.2 | 1e-65 | basic region/leucine zipper motif 27 |
Publications ? help Back to Top | |||
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