PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00026260001

Common Name

GSBRNA2T00026260001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB

Protein Properties

Length: 252aa MW: 28085.7 Da PI: 7.8559

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00026260001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.2	3.3e-17	25	72	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde+lv +k+ G g+W++ +++ g+ R++k+c++rw +yl GSBRNA2T00026260001 25 RGPWTAEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYL 72 89****************************99**********97 PP
2	Myb_DNA-binding	50.9	3.5e-16	79	123	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g T++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l GSBRNA2T00026260001 79 GGITPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 123 667****************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-22	16	75	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.631	20	72	IPR017930	Myb domain
SuperFamily	SSF46689	8.44E-30	21	119	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-13	24	74	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-15	25	72	IPR001005	SANT/Myb domain
CDD	cd00167	9.79E-12	27	72	No hit	No description
PROSITE profile	PS51294	24.939	73	127	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-25	76	127	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-15	77	125	IPR001005	SANT/Myb domain
Pfam	PF00249	6.6E-15	79	123	IPR001005	SANT/Myb domain
CDD	cd00167	1.73E-12	82	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010090	Biological Process	trichome morphogenesis
GO:0010468	Biological Process	regulation of gene expression
GO:0048354	Biological Process	mucilage biosynthetic process involved in seed coat development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MTSSGGKKQV VKKMIPCCMK MGMKRGPWTA EEDEILVSFI KKEGEGRWRS LPKRAGLLRC 60 GKSCRLRWMN YLRPSVKRGG ITPDEEDLIL RLHRLLGNRW SLIAGRIPGR TDNEIKNYWN 120 THLRKKLLSE GIDPQTHKPL DANNAHHKPG EEVSGGQNLL EPNSSSHTDD TTVNSGNEAT 180 KITFSVFGGE DNEDFGFCYD DKFSSFLNAL INDDPFDSNI PLSQPLRTQD CTGAIAGTSS 240 SLEHGQRLED I*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-27	23	127	5	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Siliques. {ECO:0000269\|PubMed:9839469}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00026260001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013673132.1	0.0	transcription repressor MYB5-like
Swissprot	Q38850	1e-139	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A078GGA4	0.0	A0A078GGA4_BRANA; BnaC01g37570D protein
STRING	Bra039395.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	1e-141	myb domain protein 5

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]