PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00026166001 | ||||||||
Common Name | GSBRNA2T00026166001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 358aa MW: 40591.3 Da PI: 5.3492 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 115.8 | 2.7e-36 | 38 | 137 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 aC+aCk++rr+Ca+dC+lapyfpaeqpk f+nvh lFG++ ++k+l++l+e ++++am+s+++++ +r r+P++G++g+ ++lq + + GSBRNA2T00026166001 38 ACSACKYQRRRCATDCPLAPYFPAEQPKIFQNVHSLFGVRSIIKILENLDEAQKPEAMKSIIFQSYVRDRNPIHGCLGITQQLQYMIWLA 127 7***************************************************************************************** PP DUF260 91 kaelallkee 100 ++el++++++ GSBRNA2T00026166001 128 EEELKMINSQ 137 ****999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.492 | 37 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.2E-34 | 38 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MSQIKTIHNL IGSLEKLLDL LLLSLIIFMT LKGGTSGACS ACKYQRRRCA TDCPLAPYFP 60 AEQPKIFQNV HSLFGVRSII KILENLDEAQ KPEAMKSIIF QSYVRDRNPI HGCLGITQQL 120 QYMIWLAEEE LKMINSQLQI HRNNTNTWQY HHNAHNQMSH EIGEKLEDVT SQLNLGVGLM 180 VNNNQNNTIP FFSPLPVFER QPQQPQMSYT YSSSEINNNC YSSPVYTDSC KEILTTNNNN 240 VDASLAWGQN RFPYHHNNGF SNQNEHCNET KSNNGVTAIQ SQLVNHQMVS NQQDEVDDVE 300 YDEIHQFLEI IDDKQSFPDT KLTYASSSGE SLKERTDETG ESELRSAATC FSLTSVN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-22 | 34 | 138 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-22 | 34 | 138 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00026166001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013591366.1 | 0.0 | PREDICTED: LOB domain-containing protein 27-like isoform X2 | ||||
Swissprot | Q9STS6 | 1e-124 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | A0A078J5G0 | 0.0 | A0A078J5G0_BRANA; BnaC01g42830D protein | ||||
STRING | Bo1g072490.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6303 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-112 | LOB domain-containing protein 27 |
Publications ? help Back to Top | |||
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