PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00026065001
Common NameGSBRNA2T00026065001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 241aa    MW: 27195.2 Da    PI: 9.4479
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00026065001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.62.5e-322477255
              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         prl+WtpeLH++Fv+av+ LGG+ kAtPk +l++m+vkgLt++hvkSHLQ+YR 
  GSBRNA2T00026065001 24 PRLKWTPELHQNFVHAVNMLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRG 77
                         8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.9522080IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-292078IPR009057Homeodomain-like
SuperFamilySSF466896.27E-162477IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-222476IPR006447Myb domain, plants
PfamPF002492.0E-92576IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRCGRSSDG GISGARPYVR SPVPRLKWTP ELHQNFVHAV NMLGGQYKAT PKLVLKIMDV  60
KGLTISHVKS HLQMYRGYKP TLLGRSESSS SSRRRRQDNE DHFYDNLSEH ARNDCLLGFH  120
SFNFRRGRTS ADNDDDDFLN NISMERTKTF AGIGESNKFQ SNHFLEVQRT KNIWVNEEED  180
LTLSLSLDHP HNSQKRWRSN TSSSLSETSE AVSSAFISRD CFASSKIDLN LNLSFSSSSS  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A9e-202576354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-202576354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-202576354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-202576354Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00026065001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304861e-133AJ630486.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g14600.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603629.11e-144PREDICTED: putative Myb family transcription factor At1g14600
SwissprotQ700D91e-110MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A078J7Y71e-177A0A078J7Y7_BRANA; BnaA09g56920D protein
STRINGBra026818.1-P1e-177(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46941852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.12e-98G2-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]