PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00025173001
Common NameGSBRNA2T00025173001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 285aa    MW: 31749.8 Da    PI: 9.0338
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00025173001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.4e-20203237135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C tt+Tp+WR+gp+g+ktLCnaCG+++r+ +l
  GSBRNA2T00025173001 203 CTHCETTETPQWREGPSGPKTLCNACGVRFRSGRL 237
                          *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.85E-15195259No hitNo description
PROSITE profilePS5011412.611197233IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-19197247IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-15201234IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.89E-17202259No hitNo description
PfamPF003204.2E-18203237IPR000679Zinc finger, GATA-type
PROSITE patternPS003440203228IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MNWLLPEEGL SDDLFGDLFN SVELSLQDID DDDTTNGEVE DWEAKFQHLE PPPMDVFTSF  60
PTEFTSSCRV NKLGRVGTVP VLKQSGACAA LSGTSPHKFS SPADDIKVSK MFQSLSPVSV  120
FESSDASFSP HNSRSQRLTS PVKGMRSKRK RPTTVRFKYL HQFDEASKPE MLAPGESGLR  180
TYYAFEQHAK KKHKISSKVA RKCTHCETTE TPQWREGPSG PKTLCNACGV RFRSGRLVPE  240
YRPASSPTFV PSVHSNSHRK IIEMRRKEGG QFHTSMIHGV ISRA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00025173001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895180.0AC189518.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB090M17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110913.10.0PREDICTED: GATA transcription factor 11-like
SwissprotQ6DBP81e-109GAT11_ARATH; GATA transcription factor 11
TrEMBLA0A078J4C00.0A0A078J4C0_BRANA; BnaAnng15440D protein
STRINGBra030709.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-111GATA transcription factor 11
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]