PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00024662001 | ||||||||
Common Name | GSBRNA2T00024662001, LOC106351054 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 177aa MW: 19153.7 Da PI: 10.4539 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.2 | 1.2e-19 | 20 | 69 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp++ r+r++lg+f+tae Aa+a++aa++ ++g GSBRNA2T00024662001 20 RYRGVRKRP-WGRFAAEIRDPVK---RTRVWLGTFDTAENAARAYDAAARDFRG 69 6********.**********755...5**********************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.25E-21 | 20 | 79 | No hit | No description |
SMART | SM00380 | 2.5E-37 | 20 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.289 | 20 | 77 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-32 | 20 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-22 | 20 | 78 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.6E-13 | 20 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MKTGLKPDPN PVERNEKEVR YRGVRKRPWG RFAAEIRDPV KRTRVWLGTF DTAENAARAY 60 DAAARDFRGP KAKTNFPPTV LELNANKEGR FARSPSQSST VDSVSPTGRR LAALPQLELS 120 LGGGGSGGGA CYDHVPVARP LYFYNNMKAF SPAGTCGGEK KPQPLNLDLT LAPPAE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-20 | 21 | 80 | 6 | 66 | ATERF1 |
3gcc_A | 2e-20 | 21 | 80 | 6 | 66 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00024662001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and by Alternaria brassicicola (locally and systemically), but only slightly by ethylene. Strong induction by wounding, cold or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013646326.1 | 1e-126 | ethylene-responsive transcription factor 4 | ||||
Swissprot | O80340 | 1e-51 | ERF78_ARATH; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A078GFG7 | 1e-125 | A0A078GFG7_BRANA; BnaA06g01090D protein | ||||
STRING | Bra039658.1-P | 1e-125 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53170.1 | 3e-30 | ethylene response factor 8 |
Link Out ? help Back to Top | |
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Entrez Gene | 106351054 |