PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00024330001 | ||||||||
Common Name | GSBRNA2T00024330001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 244aa MW: 28085.7 Da PI: 9.8697 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 77.6 | 2.9e-24 | 99 | 226 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyat.gkrknratksgyWkatg 87 ppG rF Pt+ v +L++kv++kk +i+++d+yk +Pw L+ +v++ + ewy+F++r+k+ a+ +r+ r g+Wk+t GSBRNA2T00024330001 99 PPGSRFLPTNLGCVRVHLRNKVDKKKSG---FITTLDLYKDDPWLLD-HVQNdlfPRGEWYYFTPRNKRGASsCTRTVRGRGGGTWKSTS 184 9************************955...5**************8.3433233445********9998753789999999******** PP NAM 88 kdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 ++++++k++++ g k++Lv+ k + k e t W m ey l GSBRNA2T00024330001 185 GKEPIKDKDEKVQGYKQSLVYNKTnVNGKIEPTGWNMTEYCL 226 *********************96525566679********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-31 | 95 | 240 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.326 | 98 | 242 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-15 | 99 | 226 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MEKMNRDHQS KSKVDESSSK SNYVLGREEG SSSSHSHVNN LQEQQRLMML RSQGMPPPPP 60 VNHMYNLEEH QRRMLHYHRM PHTDPSSSSI NTVKGRVYPP GSRFLPTNLG CVRVHLRNKV 120 DKKKSGFITT LDLYKDDPWL LDHVQNDLFP RGEWYYFTPR NKRGASSCTR TVRGRGGGTW 180 KSTSGKEPIK DKDEKVQGYK QSLVYNKTNV NGKIEPTGWN MTEYCLYEEN QDDLVLCRIK 240 GNL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-15 | 99 | 239 | 18 | 162 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-15 | 99 | 239 | 18 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-15 | 99 | 239 | 18 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-15 | 99 | 239 | 18 | 162 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-15 | 99 | 239 | 18 | 162 | NAC domain-containing protein 19 |
4dul_B | 2e-15 | 99 | 239 | 18 | 162 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00024330001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022556272.1 | 1e-146 | NAC domain-containing protein 6-like | ||||
TrEMBL | A0A078GFI2 | 0.0 | A0A078GFI2_BRANA; BnaC04g01450D protein | ||||
TrEMBL | A0A3P6BZZ9 | 0.0 | A0A3P6BZZ9_BRAOL; Uncharacterized protein | ||||
STRING | Bra004579.1-P | 1e-153 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14026 | 9 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03490.1 | 2e-26 | NAC domain containing protein 6 |
Publications ? help Back to Top | |||
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