PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00024141001 | ||||||||
Common Name | GSBRNA2T00024141001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 471aa MW: 51648 Da PI: 6.5018 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33 | 1e-10 | 44 | 69 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++f+rtG C yG++C+++H+ GSBRNA2T00024141001 44 PGERDCHYFLRTGKCGYGSSCRYNHP 69 5789*********************9 PP | |||||||
2 | zf-CCCH | 37.1 | 5.5e-12 | 90 | 114 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tG CkyG+ Ck++H++ GSBRNA2T00024141001 90 QPDCEYFLKTGACKYGAACKYNHPK 114 789********************96 PP | |||||||
3 | zf-CCCH | 30.7 | 5.3e-10 | 135 | 159 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++++ G C++G CkF+H++ GSBRNA2T00024141001 135 EKSCPYYMQKGMCRFGVACKFHHPQ 159 667********************97 PP | |||||||
4 | zf-CCCH | 43.3 | 6e-14 | 227 | 251 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++Crff++tGtCkyGd+Ck++H++ GSBRNA2T00024141001 227 RAECRFFMKTGTCKYGDSCKYSHPK 251 799********************96 PP | |||||||
5 | zf-CCCH | 34.8 | 2.8e-11 | 272 | 297 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +f ++G+CkyG++CkF H+ GSBRNA2T00024141001 272 PGQPACGNFKAYGFCKYGANCKFDHP 297 57899********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.587 | 43 | 71 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-5 | 43 | 70 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-8 | 45 | 69 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.5E-6 | 47 | 71 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-4 | 49 | 69 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1E-6 | 87 | 114 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.849 | 87 | 115 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-9 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 91 | 115 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 93 | 113 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-6 | 131 | 160 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 132 | 159 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.638 | 132 | 160 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-7 | 134 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-4 | 137 | 158 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.084 | 224 | 252 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-9 | 225 | 251 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-11 | 227 | 251 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-7 | 227 | 253 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-7 | 230 | 251 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.24E-6 | 268 | 297 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.277 | 271 | 299 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.4E-6 | 271 | 298 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-8 | 273 | 297 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-4 | 277 | 296 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MSETQQVQNS TGSIPSSDKT EDTLTKVKVN EENMDEPSLF PDRPGERDCH YFLRTGKCGY 60 GSSCRYNHPV SHVPEAVFYH REELPERVGQ PDCEYFLKTG ACKYGAACKY NHPKDRNGAG 120 PVLFNTLGYP MRQGEKSCPY YMQKGMCRFG VACKFHHPQT HNAQPTSFPF GGSLPVMSLA 180 PATYEAMSRP QALHPQAYSF MVAPPQGWST FMGGYDMKTE LDSSSERAEC RFFMKTGTCK 240 YGDSCKYSHP KERMLLSPPP NLFNPVVLPA RPGQPACGNF KAYGFCKYGA NCKFDHPVPV 300 NTYNNTGSTM PSPPSAYAPP VSTPVRITSP PSRSNGGDKP AAEDNSSETV KEEDGPEKSE 360 VQDDDPSPPF SDANQSGFVW VAAVTQPDLE KRVDVGGYGY PAMVAMNVKK GVYTPLRSAF 420 ELQHLLEFVK DAGAGGKGNL PMNGTPEIVK TKAWDGTNGE VMEEDIYILT * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.28245 | 0.0 | microspore| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00024141001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013648869.1 | 0.0 | zinc finger CCCH domain-containing protein 26-like | ||||
Swissprot | O48772 | 1e-167 | C3H26_ARATH; Zinc finger CCCH domain-containing protein 26 | ||||
TrEMBL | A0A078GBF2 | 0.0 | A0A078GBF2_BRANA; BnaC04g43420D protein | ||||
STRING | Bra021817.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2380 | 26 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32930.1 | 1e-151 | zinc finger nuclease 2 |
Publications ? help Back to Top | |||
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