PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00024057001
Common NameGSBRNA2T00024057001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 256aa    MW: 29203.1 Da    PI: 8.5263
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00024057001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1622.2e-50141351128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelvv+yL++kv+g +l++ +vi+++di+k++PwdLp      e+e yfFs+r+ ky++g+r+nr+t sgyWkatg dk
  GSBRNA2T00024057001  14 LPPGFRFHPTDEELVVQYLCRKVTGLPLPA-SVIPDIDICKADPWDLPGD---CESERYFFSTREAKYPNGNRSNRSTGSGYWKATGIDK 99 
                          79****************************.99***************44...46799******************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++    ++lvg+kktLvfykg+ p+g++t+Wv+heyrl
  GSBRNA2T00024057001 100 QIGG--RKLVGMKKTLVFYKGKPPNGTRTNWVLHEYRL 135
                          **87..889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-597157IPR003441NAC domain
PROSITE profilePS5100557.24414157IPR003441NAC domain
PfamPF023653.1E-2615135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEKLSSIKKR GLRLPPGFRF HPTDEELVVQ YLCRKVTGLP LPASVIPDID ICKADPWDLP  60
GDCESERYFF STREAKYPNG NRSNRSTGSG YWKATGIDKQ IGGRKLVGMK KTLVFYKGKP  120
PNGTRTNWVL HEYRLLDSQQ ESYGENTNWV LCRVFLKKTS NTNNKRKEDE KEINEGKEND  180
EDNNKSACPI FYDFLRKDKK RKRCCDLNVT PTCCCCSASA SSSVCSSALT QTSTHNDSDY  240
HEEITCREIK FCFFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-551216018171NAC domain-containing protein 19
3swm_B5e-551216018171NAC domain-containing protein 19
3swm_C5e-551216018171NAC domain-containing protein 19
3swm_D5e-551216018171NAC domain-containing protein 19
3swp_A5e-551216018171NAC domain-containing protein 19
3swp_B5e-551216018171NAC domain-containing protein 19
3swp_C5e-551216018171NAC domain-containing protein 19
3swp_D5e-551216018171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00024057001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634266.10.0PREDICTED: NAC domain-containing protein 41-like
SwissprotO227981e-113NAC41_ARATH; NAC domain-containing protein 41
TrEMBLA0A3N6R1Y60.0A0A3N6R1Y6_BRACR; Uncharacterized protein
STRINGBo4g181990.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.11e-109NAC domain containing protein 41
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]