PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00023179001
Common NameGSBRNA2T00023179001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 452aa    MW: 48625 Da    PI: 8.0394
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00023179001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06126147426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          ++Cr++   G C++Gd+C++ H+
  GSBRNA2T00023179001 126 KICRYWVD-GSCSHGDKCRYLHC 147
                          79******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.73E-6122146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.521122149IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-4124148IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-4125147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5126144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.105.1E-45145442IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.1E-5153192IPR001680WD40 repeat
SuperFamilySSF509783.66E-44154446IPR017986WD40-repeat-containing domain
PfamPF004004.6E-4156192IPR001680WD40 repeat
PROSITE profilePS5008213.85160201IPR001680WD40 repeat
PROSITE profilePS5029419.776160362IPR017986WD40-repeat-containing domain
PRINTSPR003201.4E-6179193IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780179193IPR019775WD40 repeat, conserved site
SMARTSM0032013232269IPR001680WD40 repeat
SMARTSM003200.033276313IPR001680WD40 repeat
PfamPF004000.063280313IPR001680WD40 repeat
PROSITE profilePS5008211.277283322IPR001680WD40 repeat
PRINTSPR003201.4E-6300314IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4316353IPR001680WD40 repeat
PfamPF004000.0048318352IPR001680WD40 repeat
PRINTSPR003201.4E-6340354IPR020472G-protein beta WD-40 repeat
SMARTSM003204.4357400IPR001680WD40 repeat
SMARTSM003203.4403440IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MYSYFKLKKE SELGPYKRPN GFQFERRQQA SLRPTRRVES SGGGGKGLTS GGLVLLAGGA  60
VQSEPLPVST PRVTGSGSES GYSNKRVADE SGFAGPGRRR GPGFNGNSSN TWGRFGGNRT  120
VTKTEKICRY WVDGSCSHGD KCRYLHCWSK GDSFSLLTQL DGHEKLVSGI ALPSGSDKLY  180
TGSKDETIRV WDCASGQCTS VLNLGAEVGC VISEGPWLLV GMPNLVKAWN IETNTDQSLS  240
GPVGQVYSFV VGTDLLFAGT QDGSILAWRY SAATNCFEPA ASLTGHTLGV VTLYVGANRL  300
YSGSMDKSIK VWSLDNLQCI QTLTDHTSVV MSLICWDQFL LSCSLDNTVK IWAAVEGGDL  360
EVTYTHKEKH GVLALCGVHD AEAKPVLLCC CNDSTLRLYD LPSFTERGKI FAKQEIRSIQ  420
IGPGGIFFTG DGTGQVKVWK WSTAPITAAM S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B2e-19143352179387F-box/WD repeat protein 7
2ovq_B2e-19143352179387F-box/WD repeat protein 7
2ovr_B2e-19143352179387F-box/WD repeat protein 7
5v4b_B2e-19143352179387F-box/WD repeat-containing protein 7
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.68670.0flower| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00023179001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018509750.10.0PREDICTED: zinc finger CCCH domain-containing protein 63-like, partial
SwissprotQ9FNZ10.0C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A078J3C80.0A0A078J3C8_BRANA; BnaCnng32770D protein
STRINGBo9g104760.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]