PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00022771001

Common Name

ATHB-12, BnaA09g555520, GSBRNA2T00022771001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 231aa MW: 26946.1 Da PI: 5.5176

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00022771001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.8	1.6e-17	34	85	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f++eq++ Le Fe++ + +++ + A++lgL+ rqV +WFqN+Ra++k GSBRNA2T00022771001 34 KRFSEEQIKSLEVIFESETRLEPRKKVQVAQELGLQPRQVAIWFQNKRARWK 85 68*************************************************9 PP
2	HD-ZIP_I/II	117.7	6.7e-38	32	123	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +++r+s+eq+k+LE Fe+e++Lep++Kv++a+eLglqprqva+WFqn+RAR+ktkqlEk+y+ L+++y++l+++ + ++ke+++L +el GSBRNA2T00022771001 32 NQKRFSEEQIKSLEVIFESETRLEPRKKVQVAQELGLQPRQVAIWFQNKRARWKTKQLEKEYNILRANYNHLASQFDIMKKEKQALVSEL 121 689*************************************************************************************99 PP HD-ZIP_I/II 92 ke 93 ++ GSBRNA2T00022771001 122 QR 123 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.17E-17	18	89	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.4E-17	19	87	IPR009057	Homeodomain-like
SMART	SM00389	2.7E-13	24	91	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.763	27	87	IPR001356	Homeobox domain
CDD	cd00086	8.35E-13	33	88	No hit	No description
Pfam	PF00046	8.0E-15	34	85	IPR001356	Homeobox domain
PRINTS	PR00031	2.4E-5	58	67	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	62	85	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.4E-5	67	83	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.4E-15	87	128	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MEEGDVFNCC FSEINSGMSM NKNKKKMKKS NNQKRFSEEQ IKSLEVIFES ETRLEPRKKV 60 QVAQELGLQP RQVAIWFQNK RARWKTKQLE KEYNILRANY NHLASQFDIM KKEKQALVSE 120 LQRLNEEMHK SKEERREECC GEQRVALSST TRSENGKCEP EVRINQGIAL CNDDIKTEYF 180 GFEESNHELM NIVEQAGDSC LTSSDNWGGF NSDSILDQSS SNYPWWDFWS *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.11281	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:9617808}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:11374882, ECO:0000269\|PubMed:15604708}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00022771001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA), by cold and salt stress. {ECO:0000269\|PubMed:15369784, ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:9617808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT000600	0.0	KT000600.1 Brassica napus note zy72360 line homeobox-leucine zipper protein (ATHB-12) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009116857.1	1e-170	PREDICTED: homeobox-leucine zipper protein ATHB-12
Swissprot	Q9M276	1e-115	ATB12_ARATH; Homeobox-leucine zipper protein ATHB-12
TrEMBL	A0A078J590	1e-169	A0A078J590_BRANA; BnaA09g55520D protein
TrEMBL	A0A397Y3D3	1e-169	A0A397Y3D3_BRACM; Uncharacterized protein
TrEMBL	M4CTU3	1e-169	M4CTU3_BRARP; Uncharacterized protein
STRING	Bra007637.1-P	1e-170	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2498	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61890.1	1e-108	homeobox 12

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Liu J, et al. Natural variation in ARF18 gene simultaneously affects seed weight and silique length in polyploid rapeseed. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(37): p. E5123-32 [PMID:26324896] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]