PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00022378001 | ||||||||
Common Name | GSBRNA2T00022378001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 599aa MW: 65582.5 Da PI: 5.3698 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 43.7 | 6e-14 | 163 | 223 | 2 | 62 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e k+ r+++NRe+A+ sRqRKk ++eeLeekvk+L + ++L +++ e a+l+++ GSBRNA2T00022378001 163 DEKKKRARLIRNRESAQLSRQRKKHYVEELEEKVKSLHSCITDLNGKISYFMAENATLRQQ 223 6779999**************************************9999999999999887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.7E-15 | 161 | 226 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.4E-12 | 163 | 224 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.128 | 164 | 224 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.31E-12 | 166 | 224 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.5E-16 | 166 | 224 | No hit | No description |
CDD | cd14704 | 1.16E-19 | 168 | 218 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 599 aa Download sequence Send to blast |
MAESITEEPP PPEFDPISTP PFAQFHNPSS DQTPIGELMS DLGFPIDADF ELTFDGMEDL 60 YLPAEDETFL LPDNASNQEQ FGDFTPESDD ERTLDQSTPL SSQGSDNCGS DVSEAVDQKV 120 KVEEASATKR KKEDASDESR SSKFMRSGEE SAVVTGEEEE EEDEKKKRAR LIRNRESAQL 180 SRQRKKHYVE ELEEKVKSLH SCITDLNGKI SYFMAENATL RQQLGPPPPM GMYPPMAYPW 240 MHCPPYMVKQ QGGGQVPLIP IPRLKPQNPV KAKSKKSEAR TKKVASISFL GLVFCLFLFG 300 ALAPVVNVNY GGISNGVFYG SYRSNYVTDQ VYNQHRNRVL DTSRSNERDS ATESSVPPGN 360 GSEPLVASLF VPRNDKLVKI DGNLIINSIL ASEKALASES NERKADGDMA KHLVRTKAEK 420 QKALSSGSAD TLKDSIKTKA ASGEMQQWFR EGVAGPMFSS GMCTEVFQFD VSSTSGAIIP 480 ASAATNVSSE HSKNATDRQR RKNRRTLRGL AIPLPGSDFN FTKEHQRNSS SKEIKAASSM 540 VVSVLVDPRE GGDGDIDGMI GGPKSLSRVF VVVLQDSAKY VTYSCVLPRP GAPHLVTT* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 498 | 504 | QRRKNRR |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.14853 | 0.0 | seed |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator involved in salt and osmotic stress responses. Functions as a stress sensor and transducer in a signaling pathway that resembles an ER stress response. Following salt stress, BZIP17 is cleaved by SBT6.1 (S1P) and S2P at the C-terminus and the N-terminal bZIP component is translocated to the nucleus, where it activates the expression of salt stress response genes (PubMed:17662035). Functions as a stress sensor and transducer in ER stress signaling pathway. ER stress induces proteolysis of BZIP17 by SBT6.1 (S1P) and S2P, and the N-terminal bZIP component is translocated to the nucleus, where it activates the expression and production of ER chaperones, as well as protein involved in brassinosteroid (BR) signaling, which is required for stress acclimation and growth (PubMed:20876872). {ECO:0000269|PubMed:17662035, ECO:0000269|PubMed:20876872}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00022378001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY136295 | 0.0 | AY136295.1 Arabidopsis thaliana putative TGACG-sequence-specific bZIP DNA-binding protein (At2g40950) mRNA, complete cds. | |||
GenBank | BT000408 | 0.0 | BT000408.1 Arabidopsis thaliana putative TGACG-sequence-specific bZIP DNA-binding protein (At2g40950) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013687770.1 | 0.0 | bZIP transcription factor 17-like | ||||
Swissprot | O22208 | 0.0 | BZP17_ARATH; bZIP transcription factor 17 | ||||
TrEMBL | A0A078J4Q6 | 0.0 | A0A078J4Q6_BRANA; BnaC04g56770D protein | ||||
STRING | Bo4g190610.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8881 | 27 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40950.1 | 0.0 | bZIP family protein |