PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00022359001
Common NameGSBRNA2T00022359001, LOC106407700, LOC106409264
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 245aa    MW: 27997.8 Da    PI: 4.8624
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00022359001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.7e-2073128155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr++  +g+WvAeIr+p++ +g  +kr +lg+f+ta eAa a+++a+ +++g
  GSBRNA2T00022359001  73 CRFRGVRQRV-WGKWVAEIREPVNqRGgNSKRLWLGTFDTASEAALAYDRAASAMYG 128
                          689*****99.**********888777677**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1373128IPR001471AP2/ERF domain
CDDcd000181.11E-2773137No hitNo description
PROSITE profilePS5103222.15574136IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-2074137IPR016177DNA-binding domain
SMARTSM003801.7E-3274142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-2874137IPR001471AP2/ERF domain
PRINTSPR003676.9E-107586IPR001471AP2/ERF domain
PRINTSPR003676.9E-10102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEKEDNGPNQ SSSASIEPSR RRRRVAEPVD TTLSRWVKEE EEEEGLKRTR RVQAKGSRKG  60
CMRGKGGPEN PVCRFRGVRQ RVWGKWVAEI REPVNQRGGN SKRLWLGTFD TASEAALAYD  120
RAASAMYGRY ARLNFPDGLG NGQDDEMKKT DEAESSRSYW LETYNVSETG NSVVDKKDGE  180
DYLYEDCIEL GQEKIENLGR MADNEIVKSE EDYMFDGFEY GLLYNESGYY HGGGFDPYLE  240
HFRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1775143670ATERF1
3gcc_A2e-1775143670ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.172170.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in xylem tissues, stigma, anthers and region where sepals and petals attach the peduncle. {ECO:0000269|PubMed:21069430}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid-inducible transcription. Involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:21069430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00022359001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) treatment (PubMed:11798174). Induced by salt, heat and drought stresses. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634722.10.0PREDICTED: dehydration-responsive element-binding protein 2E
RefseqXP_013704026.10.0dehydration-responsive element-binding protein 2E-like
RefseqXP_013705373.10.0dehydration-responsive element-binding protein 2E-like
SwissprotO809173e-89DRE2E_ARATH; Dehydration-responsive element-binding protein 2E
TrEMBLA0A078JZV81e-179A0A078JZV8_BRANA; BnaCnng75020D protein
TrEMBLA0A0D3BQW91e-179A0A0D3BQW9_BRAOL; Uncharacterized protein
TrEMBLA0A3N6TUG61e-179A0A3N6TUG6_BRACR; Uncharacterized protein
STRINGBo4g027470.11e-180(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142491823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.15e-89ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]