PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00022030001 | ||||||||
Common Name | GSBRNA2T00022030001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 257aa MW: 28935.2 Da PI: 8.3688 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46 | 9.4e-15 | 19 | 113 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 ffk+l +d +++++ +p++f ++ + k + + ++tl+ + sW+v+l + g + +kGW++F ++n+L +++f++F+ +g+++ GSBRNA2T00022030001 19 FFKILADEDLSSESMRLIPNEFWRRSECK-NLPPKVTLKVAWESSWTVNL--SPFMGCyLMERKGWEKFLNDNHLGDNEFLTFTNEGNNC 105 99*********************999544.56779***************..66665525666*********************666666 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +v +f+k GSBRNA2T00022030001 106 I--TVDIFQK 113 5..8888876 PP | |||||||
2 | B3 | 50.3 | 4.3e-16 | 174 | 251 | 13 | 96 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + l++p +fa+eh+ + ++ ++ d++g+ Wev + + g+ ++++GW+ ++ gL +gD ++F+l++ +e+v+ v GSBRNA2T00022030001 174 LTVLSIPVTFAKEHMPN--ARTKFVIHDPKGKPWEVVY--VPSNGSKLFSSGWRFLANGYGLAVGDLCTFRLVR--PREMVLEV 251 4569**********855..4568***************..9999999************************987..44455555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.1E-16 | 15 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.77E-15 | 17 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.72E-13 | 18 | 111 | No hit | No description |
Pfam | PF02362 | 4.6E-13 | 19 | 113 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.73 | 19 | 114 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.0E-12 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-19 | 161 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.44E-20 | 161 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.858 | 162 | 255 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-14 | 165 | 255 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-13 | 172 | 249 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.35E-13 | 177 | 252 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MARNIAFGRI QEDMNKTSFF KILADEDLSS ESMRLIPNEF WRRSECKNLP PKVTLKVAWE 60 SSWTVNLSPF MGCYLMERKG WEKFLNDNHL GDNEFLTFTN EGNNCITVDI FQKNCIEILK 120 PLNTSSSNVK NEEMSCVDPV IAESKKKVDS NVYGASSSSF SAATFSLTIK KSHLTVLSIP 180 VTFAKEHMPN ARTKFVIHDP KGKPWEVVYV PSNGSKLFSS GWRFLANGYG LAVGDLCTFR 240 LVRPREMVLE VLHASS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.18614 | 0.0 | seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00022030001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013687974.1 | 1e-180 | B3 domain-containing protein At5g18090-like | ||||
Refseq | XP_022574264.1 | 1e-180 | B3 domain-containing protein At5g18090-like | ||||
TrEMBL | A0A078GDF1 | 0.0 | A0A078GDF1_BRANA; BnaC04g49490D protein | ||||
TrEMBL | A0A3P6CP33 | 0.0 | A0A3P6CP33_BRAOL; Uncharacterized protein | ||||
STRING | Bra037663.1-P | 1e-172 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17010.1 | 7e-48 | B3 family protein |
Publications ? help Back to Top | |||
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