PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00021713001
Common NameGSBRNA2T00021713001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 189aa    MW: 21330.9 Da    PI: 6.7282
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00021713001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.61.5e-0957102550
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                           + rr   NReA r++R++Kka+++ Le++vk L++ N+ L  +l+
  GSBRNA2T00021713001  57 SNKRRPCGNREAVRKYREKKKARTAYLEDEVKRLQSMNEFLLRKLQ 102
                          57788899*******************************9988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.8E-1249121No hitNo description
SMARTSM003381.1E-752120IPR004827Basic-leucine zipper domain
PfamPF077166.2E-1653103IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.96755121IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.56E-756103No hitNo description
CDDcd146866.39E-1065103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDGEEIEPWA RASGGCSHTH SCNPPGPEDA SHSHTCFHTH THLIIPDSQE NDHSDSSNKR  60
RPCGNREAVR KYREKKKART AYLEDEVKRL QSMNEFLLRK LQSQAIVEAE IIRLRTLLAE  120
MQKTIDDELG GFSFQKQCNG SGFVFKEDGC NVATRNMICE VARVECEEGK TLHEPIHSFV  180
PHSPPFSR*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young leaves and cauline leaves. {ECO:0000269|PubMed:19248824}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of salt stress response. Functions as a negative transcriptional regulator of salt stress acclimation response by regulating cation homeostasis (PubMed:18703123, PubMed:19248824). Regulates negatively the expression of genes contributing to ion and osmotic homeostasis during salt stress, such as the Na(+) transporter HKT1, the Na(+)/H(+) antiporter SOS1, the aquaporin PIP2-1 and the glutamine synthetase GLN1-3. In addition, targets genes with functions in plant growth and development, such as argonaute 4 (AGO4) and cyclophilin 19 (CYP19) (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00021713001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18703123, PubMed:19248824). Induced by osmotic stress (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018513653.11e-140PREDICTED: basic leucine zipper 24-like
RefseqXP_018513654.11e-140PREDICTED: basic leucine zipper 24-like
RefseqXP_022573725.11e-140basic leucine zipper 24 isoform X1
RefseqXP_022573726.11e-140basic leucine zipper 24 isoform X1
RefseqXP_022573727.11e-140basic leucine zipper 24 isoform X1
SwissprotQ8GTS11e-107BZP24_ARATH; Basic leucine zipper 24
TrEMBLA0A078GEX71e-139A0A078GEX7_BRANA; BnaA04g05810D protein
TrEMBLA0A397ZQS51e-139A0A397ZQS5_BRACM; Uncharacterized protein
STRINGBra033464.1-P1e-135(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151721518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51960.11e-97basic leucine zipper 24
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]