PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00021663001

Common Name

GSBRNA2T00021663001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 2246aa MW: 255004 Da PI: 5.5679

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00021663001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.7	5.7e-33	2002	2128	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 GfrF+Pt+eel+++yLk+k gk+ +ee+i+e++i+++eP+ Lp +k+k+++ wyfFs+ + + + k ++r+t++g+Wk tg GSBRNA2T00021663001 2002 LGFRFSPTQEELINFYLKNKNLGKEWIVEEAISEININSYEPKLLPslSKIKSNDLVWYFFSPYEYT--N-KTRKRTTSNGVWKLTGP 2086 6**********************888899***********5448888888**98654..3.456778999**** PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++++k g ++g+ ktLv+++ + ++g t Wvmhey++ GSBRNA2T00021663001 2087 ERKIKDKggIGGEIGIVKTLVYHERKPSSGGWTPWVMHEYHI 2128 **9654557*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52200	3.79E-8	11	98	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
Pfam	PF01582	8.8E-8	18	96	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
SuperFamily	SSF52540	7.46E-50	130	393	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	8.0E-27	155	402	IPR002182	NB-ARC
SMART	SM00382	2.8	165	299	IPR003593	AAA+ ATPase domain
Gene3D	G3DSA:3.40.50.300	1.3E-9	166	285	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PRINTS	PR00364	3.7E-20	168	183	No hit	No description
PRINTS	PR00364	3.7E-20	240	254	No hit	No description
PRINTS	PR00364	3.7E-20	333	347	No hit	No description
SuperFamily	SSF46785	7.34E-9	370	474	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF52058	5.61E-31	507	823	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	1.4E-27	510	810	IPR032675	Leucine-rich repeat domain, L domain-like
Pfam	PF07725	1.6E-8	574	593	IPR011713	Leucine-rich repeat 3
PRINTS	PR00364	3.7E-20	743	759	No hit	No description
SuperFamily	SSF52200	1.7E-32	1153	1295	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
Gene3D	G3DSA:3.40.50.10140	6.0E-17	1155	1286	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profile	PS50104	27.599	1155	1293	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
SMART	SM00255	2.5E-42	1156	1293	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
Pfam	PF01582	8.0E-45	1156	1325	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
SuperFamily	SSF52540	2.5E-45	1326	1576	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	2.7E-19	1334	1575	IPR002182	NB-ARC
Gene3D	G3DSA:3.40.50.300	1.6E-9	1348	1478	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00382	9.8E-4	1350	1491	IPR003593	AAA+ ATPase domain
CDD	cd00009	1.65E-5	1356	1469	No hit	No description
SuperFamily	SSF46785	9.52E-6	1560	1646	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF52058	3.91E-14	1687	1887	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	5.6E-12	1692	1892	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF101941	9.15E-39	1997	2146	IPR003441	NAC domain
PROSITE profile	PS51005	38.987	2000	2146	IPR003441	NAC domain
Pfam	PF02365	2.0E-20	2003	2128	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007165	Biological Process	signal transduction
GO:0005634	Cellular Component	nucleus
GO:0005774	Cellular Component	vacuolar membrane
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0043531	Molecular Function	ADP binding

Sequence ? help Back to Top
Protein Sequence Length: 2246 aa Download sequence Send to blast
MTDCEKAERF VYMSCVDEVR YSFVSHLFDA LRRNGISSVF VDSGDLLSDE AQEKVERARV 60 SVVVLPANRQ VCLEKLEKVL NCQRNKEQVV IPVLYGDSIL HGEWLSAMNL RGLSPVFQSR 120 NDCSDSKLVE KIVRNVNEKL LYMGRIGMSW KLREIENMVN KQPLGIRGVG IWGMPGIGKT 180 ELAKAVFDQV SGGFDACCFI EDYDKAFHEN RLFRILVEQL MKDQPANSGS ITKKRLRRDK 240 LMNKRVLVVL DDVRNPLLAE SFLEDFEWFG PESLIIITSR DKQVFRLCRI NQIYEVQGLT 300 EKEALQLFLL CASLNDMGEQ SLHEVAMEVI KYAHGNPLAL SIYGGALKGK ETPKDMETAF 360 LELKDRPPCK LVDAIKRTYD TLNDSEKNIF LDIACFFQGE NVDYVMQLLE GCGFSPHVGI 420 DSLIEKCLVA ITENRVRMCN FTQDVGRYMI TKGATVQIEK RSRLWEPQSI KDLLEDTEDT 480 ENGEPNVTVK FAQDTQELEA IFLDTSNLSF DIKPAAFENM LNLRLLKIYC SNPETHPVIS 540 FTRGFLHSLP GELRLFHWEN YPLQSFPQKF DPRNLVEINM PYSQLKKLWG GTKNLETLKT 600 IRLCHSRQLV DIDDILKAPS LERIDLQGCT NLQIFPPSGQ LLHLRVVNLS GCAEIKNFPD 660 VPPNIEKLHL QGTSIRSLPP SLVKPNRGEL VNLLAELSGL SDALKLERLS SLEKSSSSST 720 DVGKLSCLEL KNCSSLQSLP NMFHLEFLKV LDLSGCSELE IIQGFPQNLK ELYLTGTAVR 780 EVPQLPQSLE LLNAYGCASL ESIRLDSTQL PMHYSFSNCF KLSPQVVNQF LVKALANAKH 840 IPREHPQHAH PSHMISNLIS LLEQEFDKDL AFSFCAPTHP DQDSTIDLQP GSSVMIWLTP 900 SWRSALVGFV MQVEVAFSKD YYPATGFGIK CICRWKNKEG GSHRIEKNLH CWAPGKAVLQ 960 DHMLVFCDVK MRPRTDEGND PYILADLVVF EFYPVDNQSI RLDYSFTVER CGVYVITAAT 1020 GNTSLESISP VLSLDPNISS ALTFDSMDIS CNPSEELIKA SYDDLQEIDR ALFRCVAYLF 1080 NDEDIHLVKV EPLVACIDLN VSSRLKVLAK KHLLRVSSNG VIRMLPMGKE ILHRVSIGCS 1140 EEDSEKISVA SSGCWKYDVF LSFSSQDVRK SFLSHLLKAF ISKGITMFID NEIFRRQAIS 1200 PEVLQAIRES SILIVVFSRD YASSSWLLGE LAEIAKSRKE LSQIVIPVFY YVDPWHVKTQ 1260 AGDFGRQFGQ TCKKETEDEK QRWCQALTNI ADILGISFKN WDNEADMAET IANDVSSKLN 1320 ITESEGFGEF VRIENHVSKL NILLSLESEE VRMVGIWGPS GIGKTDIARA LYSRLAHRFQ 1380 RTIFVDMSFV YRRPDYYGAK VDFQTQFLSE VLGREYFKVG MDHLCMVRDM LKEQRVLIIL 1440 DDVDDQVRLL DVLVEQTEWF GSGSRIVVIT QDIGLLKSYG IDKIYYVDLP SQKEALQMFC 1500 QSAFRQNYPP DGFMEIAVEV AEAVGNLPLG LIVLGSYLRG REITEWVDIL TQIKDSLDGK 1560 MEMILRVAYD SLSDHDDKII YLHIACLFNY DTVEYVTCLL SDSHLSVVCR LKSLAEKSFI 1620 HITENGYITM HHLQQNFGRE IVRNESIYSP GKRQFLVDSE DILDVFQDNT GTESVLGISL 1680 DISELDRELY ISERGFSGMT NLRFLKFYTN LGNKEVNVHL PHGLDYLCPK LRLLHWEAFP 1740 MRCMPSHFFP ENLVVLAMEA SKLEKLWNEA QPLRSLKCMK ISRSISDLYL DGTAIEEVPW 1800 WIENISRLSH LSMNDSWQNH PEEISTSVTT VNMSGNSFQR LPDTWTSIQP EDLIFHSCRN 1860 LVSLPTLPTS LFRLTANNCE SLESLHGVLT IYLPRSSLSK RFPSFKACIM IESRSGSFHF 1920 GLLNYSDVQF EFDCLDDKKE MIQIKECGIQ LLEVSPSADE SGKIFKPESG YDSEESDVED 1980 IGSCKRIRVD YLFPDQMNNN RLGFRFSPTQ EELINFYLKN KNLGKEWIVE EAISEININS 2040 YEPKLLPSLS KIKSNDLVWY FFSPYEYTNK TRKRTTSNGV WKLTGPERKI KDKGGIGGEI 2100 GIVKTLVYHE RKPSSGGWTP WVMHEYHITC LPPDQRTYVL CKILYKGEAR DFPSGNNEVG 2160 IIPSDFPSAG NYSSDLCYSF VGDSNSVGAT SLTKMKKRQQ KLPSVQTPVV DSNTVRAANF 2220 SKMYRLLQNL PSVEIQGKFN SDTAP*

Sequence ? help Back to Top

Protein Sequence Length: 2246 aa Download sequence Send to blast

MTDCEKAERF VYMSCVDEVR YSFVSHLFDA LRRNGISSVF VDSGDLLSDE AQEKVERARV  60
SVVVLPANRQ VCLEKLEKVL NCQRNKEQVV IPVLYGDSIL HGEWLSAMNL RGLSPVFQSR  120
NDCSDSKLVE KIVRNVNEKL LYMGRIGMSW KLREIENMVN KQPLGIRGVG IWGMPGIGKT  180
ELAKAVFDQV SGGFDACCFI EDYDKAFHEN RLFRILVEQL MKDQPANSGS ITKKRLRRDK  240
LMNKRVLVVL DDVRNPLLAE SFLEDFEWFG PESLIIITSR DKQVFRLCRI NQIYEVQGLT  300
EKEALQLFLL CASLNDMGEQ SLHEVAMEVI KYAHGNPLAL SIYGGALKGK ETPKDMETAF  360
LELKDRPPCK LVDAIKRTYD TLNDSEKNIF LDIACFFQGE NVDYVMQLLE GCGFSPHVGI  420
DSLIEKCLVA ITENRVRMCN FTQDVGRYMI TKGATVQIEK RSRLWEPQSI KDLLEDTEDT  480
ENGEPNVTVK FAQDTQELEA IFLDTSNLSF DIKPAAFENM LNLRLLKIYC SNPETHPVIS  540
FTRGFLHSLP GELRLFHWEN YPLQSFPQKF DPRNLVEINM PYSQLKKLWG GTKNLETLKT  600
IRLCHSRQLV DIDDILKAPS LERIDLQGCT NLQIFPPSGQ LLHLRVVNLS GCAEIKNFPD  660
VPPNIEKLHL QGTSIRSLPP SLVKPNRGEL VNLLAELSGL SDALKLERLS SLEKSSSSST  720
DVGKLSCLEL KNCSSLQSLP NMFHLEFLKV LDLSGCSELE IIQGFPQNLK ELYLTGTAVR  780
EVPQLPQSLE LLNAYGCASL ESIRLDSTQL PMHYSFSNCF KLSPQVVNQF LVKALANAKH  840
IPREHPQHAH PSHMISNLIS LLEQEFDKDL AFSFCAPTHP DQDSTIDLQP GSSVMIWLTP  900
SWRSALVGFV MQVEVAFSKD YYPATGFGIK CICRWKNKEG GSHRIEKNLH CWAPGKAVLQ  960
DHMLVFCDVK MRPRTDEGND PYILADLVVF EFYPVDNQSI RLDYSFTVER CGVYVITAAT  1020
GNTSLESISP VLSLDPNISS ALTFDSMDIS CNPSEELIKA SYDDLQEIDR ALFRCVAYLF  1080
NDEDIHLVKV EPLVACIDLN VSSRLKVLAK KHLLRVSSNG VIRMLPMGKE ILHRVSIGCS  1140
EEDSEKISVA SSGCWKYDVF LSFSSQDVRK SFLSHLLKAF ISKGITMFID NEIFRRQAIS  1200
PEVLQAIRES SILIVVFSRD YASSSWLLGE LAEIAKSRKE LSQIVIPVFY YVDPWHVKTQ  1260
AGDFGRQFGQ TCKKETEDEK QRWCQALTNI ADILGISFKN WDNEADMAET IANDVSSKLN  1320
ITESEGFGEF VRIENHVSKL NILLSLESEE VRMVGIWGPS GIGKTDIARA LYSRLAHRFQ  1380
RTIFVDMSFV YRRPDYYGAK VDFQTQFLSE VLGREYFKVG MDHLCMVRDM LKEQRVLIIL  1440
DDVDDQVRLL DVLVEQTEWF GSGSRIVVIT QDIGLLKSYG IDKIYYVDLP SQKEALQMFC  1500
QSAFRQNYPP DGFMEIAVEV AEAVGNLPLG LIVLGSYLRG REITEWVDIL TQIKDSLDGK  1560
MEMILRVAYD SLSDHDDKII YLHIACLFNY DTVEYVTCLL SDSHLSVVCR LKSLAEKSFI  1620
HITENGYITM HHLQQNFGRE IVRNESIYSP GKRQFLVDSE DILDVFQDNT GTESVLGISL  1680
DISELDRELY ISERGFSGMT NLRFLKFYTN LGNKEVNVHL PHGLDYLCPK LRLLHWEAFP  1740
MRCMPSHFFP ENLVVLAMEA SKLEKLWNEA QPLRSLKCMK ISRSISDLYL DGTAIEEVPW  1800
WIENISRLSH LSMNDSWQNH PEEISTSVTT VNMSGNSFQR LPDTWTSIQP EDLIFHSCRN  1860
LVSLPTLPTS LFRLTANNCE SLESLHGVLT IYLPRSSLSK RFPSFKACIM IESRSGSFHF  1920
GLLNYSDVQF EFDCLDDKKE MIQIKECGIQ LLEVSPSADE SGKIFKPESG YDSEESDVED  1980
IGSCKRIRVD YLFPDQMNNN RLGFRFSPTQ EELINFYLKN KNLGKEWIVE EAISEININS  2040
YEPKLLPSLS KIKSNDLVWY FFSPYEYTNK TRKRTTSNGV WKLTGPERKI KDKGGIGGEI  2100
GIVKTLVYHE RKPSSGGWTP WVMHEYHITC LPPDQRTYVL CKILYKGEAR DFPSGNNEVG  2160
IIPSDFPSAG NYSSDLCYSF VGDSNSVGAT SLTKMKKRQQ KLPSVQTPVV DSNTVRAANF  2220
SKMYRLLQNL PSVEIQGKFN SDTAP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5h3c_A	2e-50	1153	1328	1	174	Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1
5h3c_B	2e-50	1153	1328	1	174	Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1
5tec_A	2e-50	1153	1328	1	174	Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1
5tec_B	2e-50	1153	1328	1	174	Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Acts also as a disease resistance protein that specifically recognizes the AvrRps4 type III effector avirulence protein from P.syringae. Heterodimerization with RPS4B is required to form a functional complex to recognize AvrRps4 and to mediate the hypersensitive response (PubMed:25744164). {ECO:0000250\|UniProtKB:P0DKH5, ECO:0000269\|PubMed:25744164}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00021663001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013714869.1	0.0	disease resistance protein RRS1-like
Swissprot	Q9FL92	0.0	RRS1B_ARATH; Disease resistance protein RRS1B
TrEMBL	A0A078GCT4	0.0	A0A078GCT4_BRANA; BnaC09g18980D protein
STRING	Bo9g061240.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2506	8	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45050.1	0.0	Disease resistance protein (TIR-NBS-LRR class)

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]