PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G45050.1 | ||||||||
Common Name | ATWRKY16, K21C13.24, TTR1, WRKY16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 1372aa MW: 155701 Da PI: 6.274 | ||||||||
Description | Disease resistance protein (TIR-NBS-LRR class) | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.4 | 3e-28 | 1180 | 1238 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D + WrKYGqK++k+s++prsYYrC+s+ gC ++k+vers++dp+v +itY +eHnh+ AT5G45050.1 1180 SDLWVWRKYGQKPIKSSPYPRSYYRCASSkGCFARKQVERSRTDPNVSVITYISEHNHP 1238 699***********************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52200 | 5.49E-6 | 8 | 98 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
SuperFamily | SSF52540 | 3.43E-49 | 130 | 390 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00931 | 2.6E-27 | 154 | 399 | IPR002182 | NB-ARC |
Gene3D | G3DSA:3.40.50.300 | 3.5E-10 | 161 | 285 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PRINTS | PR00364 | 7.2E-23 | 165 | 180 | No hit | No description |
PRINTS | PR00364 | 7.2E-23 | 237 | 251 | No hit | No description |
PRINTS | PR00364 | 7.2E-23 | 330 | 344 | No hit | No description |
SuperFamily | SSF46785 | 1.85E-12 | 370 | 467 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:3.40.50.300 | 6.8E-5 | 418 | 469 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SuperFamily | SSF52058 | 1.81E-30 | 522 | 821 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 2.2E-27 | 534 | 812 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Pfam | PF07725 | 9.2E-9 | 570 | 589 | IPR011713 | Leucine-rich repeat 3 |
PRINTS | PR00364 | 7.2E-23 | 744 | 760 | No hit | No description |
Gene3D | G3DSA:2.20.25.80 | 3.1E-27 | 1166 | 1240 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-24 | 1177 | 1240 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-34 | 1179 | 1239 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.745 | 1180 | 1240 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.5E-23 | 1181 | 1238 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005774 | Cellular Component | vacuolar membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0043531 | Molecular Function | ADP binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000005 | anatomy | cultured plant cell | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 1372 aa Download sequence Send to blast |
MTESEQIVYI SCIEEVRYSF VSHLSKALQR KGVNDVFIDS DDSLSNESQS MVERARVSVM 60 ILPGNRTVSL DKLVKVLDCQ KNKDQVVVPV LYGVRSSETE WLSALDSKGF SSVHHSRKEC 120 SDSQLVKETV RDVYEKLFYM ERIGIYSKLL EIEKMINKQP LDIRCVGIWG MPGIGKTTLA 180 KAVFDQMSGE FDAHCFIEDY TKAIQEKGVY CLLEEQFLKE NAGASGTVTK LSLLRDRLNN 240 KRVLVVLDDV RSPLVVESFL GGFDWFGPKS LIIITSKDKS VFRLCRVNQI YEVQGLNEKE 300 ALQLFSLCAS IDDMAEQNLH EVSMKVIKYA NGHPLALNLY GRELMGKKRP PEMEIAFLKL 360 KECPPAIFVD AIKSSYDTLN DREKNIFLDI ACFFQGENVD YVMQLLEGCG FFPHVGIDVL 420 VEKSLVTISE NRVRMHNLIQ DVGRQIINRE TRQTKRRSRL WEPCSIKYLL EDKEQNENEE 480 QKTTFERAQV PEEIEGMFLD TSNLSFDIKH VAFDNMLNLR LFKIYSSNPE VHHVNNFLKG 540 SLSSLPNVLR LLHWENYPLQ FLPQNFDPIH LVEINMPYSQ LKKLWGGTKD LEMLKTIRLC 600 HSQQLVDIDD LLKAQNLEVV DLQGCTRLQS FPATGQLLHL RVVNLSGCTE IKSFPEIPPN 660 IETLNLQGTG IIELPLSIVK PNYRELLNLL AEIPGLSGVS NLEQSDLKPL TSLMKISTSY 720 QNPGKLSCLE LNDCSRLRSL PNMVNLELLK ALDLSGCSEL ETIQGFPRNL KELYLVGTAV 780 RQVPQLPQSL EFFNAHGCVS LKSIRLDFKK LPVHYTFSNC FDLSPQVVND FLVQAMANVI 840 AKHIPRERHV TGFSQKTVQR SSRDSQQELN KTLAFSFCAP SHANQNSKLD LQPGSSSMTR 900 LDPSWRNTLV GFAMLVQVAF SEGYCDDTDF GISCVCKWKN KEGHSHRREI NLHCWALGKA 960 VERDHTFVFF DVNMRPDTDE GNDPDIWADL VVFEFFPVNK QRKPLNDSCT VTRCGVRLIT 1020 AVNCNTSIEN ISPVLSLDPM EVSGNEDEEV LRVRYAGLQE IYKALFLYIA GLFNDEDVGL 1080 VAPLIANIID MDVSYGLKVL AYRSLIRVSS NGEIVMHYLL RQMGKEILHT ESKKTDKLVD 1140 NIQSSMIATK EIEITRSKSR RKNNKEKRVV CVVDRGSRSS DLWVWRKYGQ KPIKSSPYPR 1200 SYYRCASSKG CFARKQVERS RTDPNVSVIT YISEHNHPFP TLRNTLAGST RSSSSKCSDV 1260 TTSASSTVSQ DKEGPDKSHL PSSPASPPYA AMVVKEEDME QWDNMEFDVD VEEDTFIPEL 1320 FPEDTFADMD KLEENSQTMF LSRRSSGGNM EAQGKNSSDD REVNLPSKIL NR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4c6s_A | 4e-41 | 5 | 144 | 5 | 150 | PROBABLE WRKY TRANSCRIPTION FACTOR 52 |
4c6t_A | 4e-41 | 2 | 144 | 3 | 151 | PROBABLE WRKY TRANSCRIPTION FACTOR 52 |
4c6t_C | 4e-41 | 2 | 144 | 3 | 151 | PROBABLE WRKY TRANSCRIPTION FACTOR 52 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.21909 | 0.0 | flower| leaf| root| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 30694674 | 0.0 | ||||
Genevisible | 248973_at | 0.0 | ||||
Expression Atlas | AT5G45050 | - | ||||
AtGenExpress | AT5G45050 | - | ||||
ATTED-II | AT5G45050 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus. | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Acts also as a disease resistance protein that specifically recognizes the AvrRps4 type III effector avirulence protein from P.syringae. Heterodimerization with RPS4B is required to form a functional complex to recognize AvrRps4 and to mediate the hypersensitive response (PubMed:25744164). {ECO:0000250|UniProtKB:P0DKH5, ECO:0000269|PubMed:25744164}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G45050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q9FL92 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G45050 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY045888 | 0.0 | AY045888.2 Arabidopsis thaliana At5g45050 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_851133.1 | 0.0 | Disease resistance protein (TIR-NBS-LRR class) | ||||
Swissprot | Q9FL92 | 0.0 | RRS1B_ARATH; Disease resistance protein RRS1B | ||||
TrEMBL | F4KBS5 | 0.0 | F4KBS5_ARATH; Disease resistance protein (TIR-NBS-LRR class) | ||||
STRING | AT5G45050.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2506 | 8 | 14 | Representative plant | OGRP18 | 2 | 3 |
Link Out ? help Back to Top | |
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Phytozome | AT5G45050.1 |
Entrez Gene | 834536 |
iHOP | AT5G45050 |
wikigenes | AT5G45050 |