PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00021536001
Common NameGSBRNA2T00021536001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 276aa    MW: 30837.8 Da    PI: 8.1017
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00021536001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000171232323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C+ C+ksF++   L  H+r+H
  GSBRNA2T00021536001 12 CQVCKKSFPNGRALGGHMRSH 32
                         ********************9 PP
2zf-C2H214.40.00011249271123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC++Cg++F +   L  H ++H
  GSBRNA2T00021536001 249 YKCEICGRVFESGQALGGHKKVH 271
                          9***********99999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.6E-91034IPR007087Zinc finger, C2H2
SMARTSM003550.171032IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6191037IPR007087Zinc finger, C2H2
SuperFamilySSF576679.05E-51135No hitNo description
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
SuperFamilySSF576675.37E-7206271No hitNo description
PfamPF139122.7E-10208231IPR007087Zinc finger, C2H2
SMARTSM003550.19208230IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66208235IPR007087Zinc finger, C2H2
PROSITE patternPS000280210230IPR007087Zinc finger, C2H2
PfamPF139124.6E-10248271IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.198249271IPR007087Zinc finger, C2H2
SMARTSM003550.0086249271IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280251271IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MMYSLLNETR NCQVCKKSFP NGRALGGHMR SHSRKISASN AKSATGSTVP TLKTPTKLAA  60
NIRPNETVLM RSVHTSEVGR DPDLKREEGG QQIKGKRKFV VDVDECPSSL TAVEEGALCL  120
VAMSKGQRPA NSQNWNAIDR LLATPNEKEE YTRKSIDIDS DDDDKEDKDK YVASNVRVLT  180
EDIDENEDED DNDETYLVEK ENQCKKKFTC DICGKVLHSY QALGGHRTSH KTKRLKICDK  240
NGQAMVRHYK CEICGRVFES GQALGGHKKV HYVFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00021536001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595028.10.0PREDICTED: zinc finger protein ZAT1
RefseqXP_013694636.10.0zinc finger protein ZAT1-like
TrEMBLA0A078GCI20.0A0A078GCI2_BRANA; BnaC07g31210D protein
STRINGBo7g098740.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141711523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.13e-62C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]