PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00020965001 | ||||||||
Common Name | GSBRNA2T00020965001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 326aa MW: 37564.2 Da PI: 6.5079 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 29.2 | 2.5e-09 | 19 | 133 | 11 | 128 |
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 de ++ +yLk+ +++ +++ +++d+++ +P++ + +++ f + + +++a gk + g W+ +dk + ++ +g+l GSBRNA2T00020965001 19 DELILLRYLKPMIDDGASWPQHFAEDADVFNKNPSKEF-----NPENTVFVIVNPRTEACGKTDGC--DYGSWRIMARDKLIRNEeTGKL 101 5556789******99996665779999*******8753.....33556666777777776655544..689***********99878889 PP NAM 100 vglkktLvfy.kgrapkge..ktdWvmheyrl 128 g kk+L f k+++ +g+ k +Wvm+eyrl GSBRNA2T00020965001 102 LGFKKILKFCvKKTKTRGReyKRSWVMEEYRL 133 *********96334444444499*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 19.632 | 9 | 148 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.89E-19 | 19 | 146 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-6 | 19 | 133 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 15.473 | 174 | 323 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.22E-20 | 175 | 321 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MAAAGDYLGI RDELMGAGDE LILLRYLKPM IDDGASWPQH FAEDADVFNK NPSKEFNPEN 60 TVFVIVNPRT EACGKTDGCD YGSWRIMARD KLIRNEETGK LLGFKKILKF CVKKTKTRGR 120 EYKRSWVMEE YRLPNPKQDH VICKIRLLFQ TEIGFLLSKH FSYSSGPLPA KQSLPAYGYG 180 FPNPEDEGAY YLQSLIDHEN EWPSYVTNDV YCMHPSALVD PHRDQMFARF GLCIFANRTE 240 ACGYTDGCES GCWRIMEGDK PISSIMVGEM FGYRRVFKFC EKDIDKHLGK VDGEVMFLTW 300 IMEEYRLAEE EMKDKVLCVI KLHRR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.11116 | 0.0 | flower |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00020965001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013675548.2 | 0.0 | uncharacterized protein LOC106380325 | ||||
TrEMBL | A0A078J4I5 | 0.0 | A0A078J4I5_BRANA; BnaCnng32040D protein | ||||
STRING | Bo9g123430.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3704 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G60280.1 | 1e-115 | NAC domain containing protein 23 |
Link Out ? help Back to Top | |
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Entrez Gene | 106397971 |
Publications ? help Back to Top | |||
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