PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00020547001
Common NameGSBRNA2T00020547001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 443aa    MW: 49755.7 Da    PI: 5.4696
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00020547001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.7e-11235276854
                          HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           Er RR + N++f+ L+ l+P++     +K + a+i+ +A++YIk+L
  GSBRNA2T00020547001 235 TERERRVHFNDRFFDLKNLIPNP-----TKSDRASIVGEAIDYIKEL 276
                          59*********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-13219289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.126227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-9233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-11235288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8235276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.26E-11236281No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEEERGSIYE EMPCFDPNTP ASVTAESSFS QVQPPQILVA GSTSNSNCSL DVEEFHLSPQ  60
DSSTPFQFHI NPLPPPPCEN QYNLIHQMSH NQQQHSNWDN GYQDFNNMCP NSTTTPDLLS  120
LLHLPRCSLP LPNSSISFSD IMSSSSAAAV MYDPLFHLNF PLQPRDNNPL PNGSCLLGVE  180
EQIQMDANGG GINMMYHEPG NNNNNGGFES GAFDFSNGGN NRRGRGSGKS RTFPTERERR  240
VHFNDRFFDL KNLIPNPTKS DRASIVGEAI DYIKELLRTI EEFKMLVEKK KFGKFRSKKK  300
AKTGGEEDLE VEQEEDNVSY RPQSEVDQSC FNKKNNNKSL RCSWLKRKSK VTEVDVRIID  360
DEVTIKVVQK KKINCLLFTT KVLDQLKLDL HHVAGGQIGE HYSFLFNTKI CEGSCVYASG  420
IADTVMEVVE KQYMEAVPTN GY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.254370.0flower
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00285DAPTransfer from AT2G31220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00020547001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141141.10.0PREDICTED: transcription factor bHLH10 isoform X1
SwissprotQ84TK10.0BH010_ARATH; Transcription factor bHLH10
TrEMBLA0A078J3L80.0A0A078J3L8_BRANA; BnaA04g28800D protein
STRINGBra021711.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.11e-171bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]