PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00020292001
Common NameGSBRNA2T00020292001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 328aa    MW: 37251.2 Da    PI: 8.4412
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00020292001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.91.6e-56161421129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL+kkv + ++++ ++i evd++k+ePw+Lp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdk
  GSBRNA2T00020292001  16 LPPGFRFHPTDEELISHYLHKKVLDISFSA-KAIGEVDLNKSEPWELPWMAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDK 104
                          79**************************99.88***************8888899*********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          e+++ +++lvg+kktLvfy+grapkg+kt+Wvmheyrle
  GSBRNA2T00020292001 105 EIYR-GKSLVGMKKTLVFYRGRAPKGQKTNWVMHEYRLE 142
                          ****.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-6512166IPR003441NAC domain
PROSITE profilePS5100560.16116166IPR003441NAC domain
PfamPF023658.2E-3017141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MERFCGFQKE EEQMDLPPGF RFHPTDEELI SHYLHKKVLD ISFSAKAIGE VDLNKSEPWE  60
LPWMAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYRGK SLVGMKKTLV  120
FYRGRAPKGQ KTNWVMHEYR LEGKLSAHNL PKTAKNEWVI CRVFQKSAGG KKIPISSLIR  180
IGSLGTDFSP SLMPSLTDAS PFNDKTKTEP VYVPCFSNQT DQAQGNPLNC FSSPDIFHRI  240
PLYQTQSLQV SGDLQSPILG QEHSVLHAMI DNNRRQSLKG MSVSQETAVS TDMNTDISSD  300
FEYGKRRAQE DPSSSAGPVD LEPFWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-551317217174NAC domain-containing protein 19
3swm_B5e-551317217174NAC domain-containing protein 19
3swm_C5e-551317217174NAC domain-containing protein 19
3swm_D5e-551317217174NAC domain-containing protein 19
3swp_A5e-551317217174NAC domain-containing protein 19
3swp_B5e-551317217174NAC domain-containing protein 19
3swp_C5e-551317217174NAC domain-containing protein 19
3swp_D5e-551317217174NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.77190.0flower| leaf| seed
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00020292001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2400900.0AC240090.1 Brassica oleracea clone BOT01-6O11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595819.10.0PREDICTED: NAC domain-containing protein 100
RefseqXP_013724255.10.0NAC domain-containing protein 100
SwissprotQ9FLJ20.0NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A078J3N40.0A0A078J3N4_BRANA; BnaC07g49940D protein
STRINGBo7g098620.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.10.0NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]