PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00019704001 | ||||||||
Common Name | GSBRNA2T00019704001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 234aa MW: 26269.8 Da PI: 5.007 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.5 | 1.2e-11 | 22 | 56 | 13 | 47 |
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgkly 47 + R +++lKKA+ELS LC+++v++i + +g+l+ GSBRNA2T00019704001 22 YNARAATVLKKAFELSELCGVDVCIIWYDREGNLK 56 66799**************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 7.72E-8 | 20 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.2E-8 | 22 | 55 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 8.662 | 22 | 62 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MKMNKLLVRK DTVFKIASSA LYNARAATVL KKAFELSELC GVDVCIIWYD REGNLKKRER 60 KETTSQELED SLQSCLQTLK ESLHLDQPQD LSSNDSSLIN VYHHQASSLL SYPSSSSENC 120 VDDVSTTTTT MNHPQSKFSI LLFNHENGAL TQLANPSALP SFEQQPQIQC NQNYGTNYMD 180 LLLGEQGCNN VDLLMPTLFP PPMMMQTQTP NFQQFMQTQP VYNQIPVFGT MLS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00019704001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009105602.1 | 1e-145 | PREDICTED: agamous-like MADS-box protein AGL53 | ||||
Refseq | XP_013650696.1 | 1e-145 | agamous-like MADS-box protein AGL53 | ||||
TrEMBL | A0A078IXC3 | 1e-172 | A0A078IXC3_BRANA; BnaA07g38630D protein | ||||
STRING | Bra004071.1-P | 1e-144 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15639 | 7 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27070.1 | 3e-14 | AGAMOUS-like 53 |
Publications ? help Back to Top | |||
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