PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00019267001
Common NameGSBRNA2T00019267001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 354aa    MW: 39084.4 Da    PI: 6.1112
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00019267001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.2e-10192240355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  GSBRNA2T00019267001 192 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 240
                          58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-17187257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.21E-11187244No hitNo description
PROSITE profilePS5088815.485189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-17190257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-7192240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10195245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGGESNNEGE MGLNHGHDPS MPLYAKADPY FSSSDWDPVV NGGGFSSSHY PSVVMDNPGM  60
SCFTHYQSGS GYPDMPASLL PFGDCGGGQF LGSDKNGESV GRLMRAGESH DQVSDDGVSP  120
TRKRRQAEAE SQRNKKAVEA YQEDTQRGSD QSQKKHKDGQ SKETMNKESS QSEEAPKENY  180
IHMRARRGQA TNSHSLAERV RREKISERMR LLQELVPGCN KITGKAVMLD EIINYVQSLQ  240
QQVEFLSMKL ATVNPEVNID IDRILPKDLL QSRDRNTPTL GLNPFTSFQG NISTTTNPQY  300
NPLPQTTLES ELQSLYQMGF VTNPSTMSSF SPSNGKLKAT QTCFSLFPFF LLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120125TRKRRQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.19801e-101seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00019267001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2218060.0AK221806.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL21-86-B04.
GenBankAK2293090.0AK229309.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, partial cds, clone: RAFL16-57-I01.
GenBankAK2303470.0AK230347.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL24-20-N07.
GenBankBT0126550.0BT012655.1 Arabidopsis thaliana At1g10120 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601940.10.0PREDICTED: transcription factor bHLH74-like
SwissprotQ6NKN90.0BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A078G8140.0A0A078G814_BRANA; BnaC08g42390D protein
STRINGBo8g110780.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]