PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00019135001
Common NameGSBRNA2T00019135001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 568aa    MW: 62602.9 Da    PI: 6.06
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00019135001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.8e-07224244526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++f r G C++Gd C +aHg
  GSBRNA2T00019135001 224 PCPDFKR-GDCRRGDMCEYAHG 244
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.02E-147137IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.3E-1410137IPR020683Ankyrin repeat-containing domain
CDDcd002041.00E-1213130No hitNo description
PROSITE profilePS5029716.54759127IPR020683Ankyrin repeat-containing domain
PfamPF127961.3E-959125IPR020683Ankyrin repeat-containing domain
SMARTSM002480.585987IPR002110Ankyrin repeat
PRINTSPR014153.7E-56075IPR002110Ankyrin repeat
PROSITE profilePS5008812.44992127IPR002110Ankyrin repeat
SMARTSM002480.004292124IPR002110Ankyrin repeat
PRINTSPR014153.7E-5111125IPR002110Ankyrin repeat
SMARTSM003561.3E-5219245IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.432224246IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-5224244IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4224246IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.878254278IPR000571Zinc finger, CCCH-type
SMARTSM0035668254277IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MMNHLRVETE DTFSSLLELA ANNDVEGVRL SIDRDPSCVD EPGLWYGRQK GSKSVMVNDL  60
RTPLMVAATY GSVDVIKAIL PLTNVNRACG NDQTTALHCA ASGGAVNAVQ VVKLLLAAGA  120
DLNALDGDGQ RAGDVILMLQ ELLLSSSASR SSPTEFKKEY PVLDSSLPDI KNCIYATDEF  180
RMYSFKVRPC SRAYSHDWTE CPFVHPGENA RRRDPRKFHY SCVPCPDFKR GDCRRGDMCE  240
YAHGVFECWL HPAQYRTRLC KDGTGCARRV CFFAHTPDEL RPLYSSTGSA VHSPRSGGDF  300
AAGLSPMSPL SPSSSAMSWP HPNVPALHLP GSNLQSSRLR ASLNARDVHQ DVLSDYEQEQ  360
LLNEFSNSLS WSGRMKSLPH SNLDDLFSPE GGSSSPRFTD SAVFSPTHKS AVFNQFQQHQ  420
QQQQSMLMSP RNVVEPISPM SSRVSMLAQQ QQHRFRSLSS RELRTNTSPV VGSPVNNSSW  480
WGSSNGEPDW GMSSEEALGK LRSSSSFDGD DDEPDVSWVQ SLVKESTPNE AKENSKKPAT  540
VEVVTDNAGL EAWIEQMQLD QLIPQHN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.272701e-152leaf| vegetative meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00019135001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013683748.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_013683749.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A078GD520.0A0A078GD52_BRANA; BnaC03g23530D protein
STRINGBo3g035820.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]