PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00018864001
Common NameGSBRNA2T00018864001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 396aa    MW: 43828.2 Da    PI: 10.0456
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00018864001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1315.6e-10331374548
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                          k  rrk+kNRe+A rsR+RK  ++ eLe ++++L +eN++L k+
  GSBRNA2T00018864001 331 KTYRRKIKNRESAARSRARKMLQTMELEAEAEKLRKENHELLKK 374
                          5679***********************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.9E-4327393IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.071329374IPR004827Basic-leucine zipper domain
PfamPF001701.8E-7331374IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.41E-8331375No hitNo description
Gene3DG3DSA:1.20.5.1703.3E-10333374No hitNo description
CDDcd147071.35E-14334375No hitNo description
PROSITE patternPS000360334349IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDNNWNFKTL GTGPRGAMSR LPVSAPLSQQ GSLYSRTLDQ IQNNLGKDYG SMNMEEFLMS  60
IYNAEGTQGV APTNGVNEGL HRQGSITLPR ILSQKTVDEV WKYITEEEHT HNDGGRTNIP  120
QIQRQPTLAD ITLEDFLTLA GAILDPSSIS GIPNTSLNVE FQQKPMVSDV LGNINTVPIN  180
RVHGSYLHPN VNGSTSAYKP RQEQQQQHNP FQPQQPNMSK PHGYGYGTHV AFTSGQVNAH  240
GIRDSYMESG DQSHQENNVT LVQSVAPVPG GAMSVEVCSQ ITPFPVLDGM PKINAGSSIV  300
SPFPFTTTVS NSVRDRNRNN GIAAEKKLVE KTYRRKIKNR ESAARSRARK MLQTMELEAE  360
AEKLRKENHE LLKKQGKKIT NGSRKRLRRT KSNIQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00018864001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894130.0AC189413.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061E18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101826.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 8
RefseqXP_009101827.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 8
TrEMBLA0A078GCF30.0A0A078GCF3_BRANA; BnaA06g37000D protein
STRINGBra033649.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156311417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42910.15e-89bZIP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]