PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00018451001 | ||||||||
Common Name | GSBRNA2T00018451001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 396aa MW: 43406.9 Da PI: 5.1991 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 46.9 | 6.1e-15 | 198 | 251 | 3 | 56 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 ++k+ rr+ +NRe+ArrsR+RK++++ Le+ v eL++e ++L k+l++++ ++ GSBRNA2T00018451001 198 DVKKSRRMLSNRESARRSRRRKQEQTCDLETQVNELKGEHSSLLKQLSNMNHKY 251 789*****************************************9888887766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 9.8E-19 | 196 | 260 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.3E-12 | 197 | 250 | No hit | No description |
Pfam | PF00170 | 3.1E-14 | 198 | 252 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.944 | 198 | 252 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.61E-11 | 199 | 250 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 203 | 218 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 1.2E-12 | 267 | 357 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MNSIFSIDDF SDPFWESSPP LDSDSAKALT AEEWTVEMFF EEIASSVTSA PVGSNNNNNN 60 AIVGVSSAQS LPSVSGQNDF EEDSRFLRRE SDDYRRVLEN KLETECAATV VALRAGSVKP 120 EDSTGSPETL FQPALSSPLT QGSLVTPGEV GVTSSLLAEV KKTGVPMKQV TSGSSRDYSD 180 DDDLDEENET TGSLKPEDVK KSRRMLSNRE SARRSRRRKQ EQTCDLETQV NELKGEHSSL 240 LKQLSNMNHK YDDAAVGNRI LKADIETLRA KVKMAEETVK RVTGMNPMLL GRSNGHNNNN 300 NRMPLTGNSR MGGSSCIPPF QPQSNPNMGG LTTTILSPRL ENSFIPTPSL NSQTNSPHLQ 360 RIRPTQNHHA APTTNTYGWT TETHNDSAWP KKCVD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 212 | 219 | RRSRRRKQ |
2 | 214 | 219 | SRRRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.7524 | 0.0 | flower| microspore-derived embryo| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First observed in carpels and seeds at early stages of development, mostly in embryo and, at lower extent, in the endosperm. Accumulates and peaks at maturation. Fade out during late seed development steps, restricted to the inner layer of the seed coat, and, at very low levels, in the mature embryo and the remaining endosperm. Also present in the lignified inner subepidermal layer of the valves. In the anthers, restricted to the connective tissue at pre- and post-dehiscence stages and detected in the vascular tissue of the stamen filament. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, stems, young leaves, trichomes, hydathodes, siliques, seeds, and flowers, mostly in vascular tissues. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the C-box-like motif (5'-TGCTGACGTCA-3') and G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of gene promoters. Binds to the 5'-ACGT-3' motif of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. Involved in the defense responses to the biotrophic pathogen Hyaloperonospora parasitica and oxidative stress responses; mediates positively cell death (PubMed:12657652, PubMed:16957775, PubMed:19261733, PubMed:19531597). Promotes BZIP53-mediated response to hypoosmolarity stress that leads to POX1/PRODH1 accumulation (PubMed:16810321). {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:16810321, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:19261733, ECO:0000269|PubMed:19531597}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00018451001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009111266.1 | 0.0 | PREDICTED: basic leucine zipper 10 | ||||
Refseq | XP_013722933.1 | 0.0 | basic leucine zipper 10-like | ||||
Swissprot | O22763 | 0.0 | BZP10_ARATH; Basic leucine zipper 10 | ||||
TrEMBL | A0A078G9P9 | 0.0 | A0A078G9P9_BRANA; BnaA09g00980D protein | ||||
STRING | Bra036251.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14871 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02640.2 | 0.0 | bZIP family protein |
Publications ? help Back to Top | |||
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