PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00017701001

Common Name

GSBRNA2T00017701001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ZF-HD

Protein Properties

Length: 278aa MW: 29748.8 Da PI: 8.2121

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00017701001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	105.1	4.2e-33	49	104	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 ++YkeClkNhAa+lG+ha+DGCgEfmps++ +++++lkCaACgCHRnFHRre+ GSBRNA2T00017701001 49 FTYKECLKNHAAALGSHALDGCGEFMPSPSLVsTDPTSLKCAACGCHRNFHRREQG 104 68************************9988899****************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-21	48	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.9E-31	50	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.0E-27	50	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.258	51	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.33E-8	172	222	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.0E-17	174	223	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MDMTTHTTIT SPPKSPEPEP ETPTRIQPAK PISFSNGIIK RHHHPTLLFT YKECLKNHAA 60 ALGSHALDGC GEFMPSPSLV STDPTSLKCA ACGCHRNFHR REQGNDSSIP PPPSSVAATI 120 EYQPHHRHHP PPPQLPPHPP PRSPNSSSPP PISSSYMLLS LSGTNNNNLA FSGNNHHHQT 180 GSRKRFRTKF SQFQKEKMHE FADRVGWKMQ KRDEDDVREF CHNGGGGILA PIPAGETNNN 240 GGNELHHSVS NGGGGFDSDS GGGGGAHGGN VNGSSSS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.28499	4e-89	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers, stems and inflorescence and, to a lower extent, in leaves and stems. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00017701001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353432	1e-171	AK353432.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-43-G18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013743155.2	1e-124	zinc-finger homeodomain protein 10
Swissprot	Q9LHF0	2e-76	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A078J1U0	0.0	A0A078J1U0_BRANA; BnaC04g55850D protein
TrEMBL	A0A0D3BZV9	0.0	A0A0D3BZV9_BRAOL; Uncharacterized protein
STRING	Bo4g139060.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2220	25	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39760.1	4e-58	homeobox protein 23

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]