PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00017496001
Common NameGSBRNA2T00017496001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 301aa    MW: 33416.2 Da    PI: 9.1943
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00017496001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000433961123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y C+ C + F++   L  H+++H
  GSBRNA2T00017496001 39 YACSFCRREFRSAQALGGHMNVH 61
                         89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.38E-63665No hitNo description
PROSITE profilePS5015711.1773966IPR007087Zinc finger, C2H2
PfamPF139122.3E-53962IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEKPGGFFIP KKSNKESSWE ELAFAEDDAA GSLWPPRSYA CSFCRREFRS AQALGGHMNV  60
HRRDRARLKQ SDDQYLFSKS SSSPEHPSHK NSETSCYTLV FNSKPNHFKS QHSRAIDLPS  120
SPSSLLYLPP SRVSSGLPQK QDTSSSSPNA IEPSNNSENI LSSSPWSCPD TFVKKKRCDL  180
YETPVIEGSK KRKIERDVPK NGDTANVNLG NTTDLSLRMN VEIHEGYPIT AQVSDKETGR  240
GGSLKRRRMR ESSSQPSIFV SSLSCKSAII TRNEEIKHKG GHFEDLDLEL RLGADPPKGN  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-123461229superman protein
2l1o_A1e-123461229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174192KKRCDLYETPVIEGSKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.268351e-164root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, axillary buds and flowers. {ECO:0000269|PubMed:12154136}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00017496001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893070.0AC189307.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB033O04, complete sequence.
GenBankAC1895100.0AC189510.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB089D07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141691.10.0PREDICTED: uncharacterized protein LOC103865627
RefseqXP_013747346.10.0zinc finger protein 10
SwissprotO809421e-145ZFP10_ARATH; Zinc finger protein 10
TrEMBLA0A078IW730.0A0A078IW73_BRANA; BnaA04g29160D protein
TrEMBLA0A397ZS450.0A0A397ZS45_BRACM; Uncharacterized protein
TrEMBLM4DKX70.0M4DKX7_BRARP; Uncharacterized protein
STRINGBra017158.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110472534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-129zinc-finger protein 10
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]