PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00016893001

Common Name

GSBRNA2T00016893001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 229aa MW: 26986 Da PI: 4.8197

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00016893001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.7	4.2e-18	31	82	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f++eq++ Le Fe++ + +++ +LA++lgL+ rqV +WFqN+Ra++k GSBRNA2T00016893001 31 KRFNEEQIKSLEVIFESETRLEPRKKMQLARELGLQPRQVAIWFQNKRARWK 82 57*************************************************9 PP
2	HD-ZIP_I/II	118.2	4.6e-38	29	120	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +++r+++eq+k+LE Fe+e++Lep++K++lareLglqprqva+WFqn+RAR+k+kqlEk+y+ L+++y++l+++ e ++ke+++L +el GSBRNA2T00016893001 29 NHKRFNEEQIKSLEVIFESETRLEPRKKMQLARELGLQPRQVAIWFQNKRARWKSKQLEKEYDILRANYNNLASQFEIIKKEKQALVSEL 118 579*************************************************************************************99 PP HD-ZIP_I/II 92 ke 93 ++ GSBRNA2T00016893001 119 QR 120 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.13E-17	10	86	IPR009057	Homeodomain-like
SMART	SM00389	1.9E-15	23	88	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.503	24	84	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-15	31	82	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.0E-18	31	91	IPR009057	Homeodomain-like
CDD	cd00086	6.22E-13	32	85	No hit	No description
PRINTS	PR00031	6.5E-6	55	64	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	59	82	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.5E-6	64	80	IPR000047	Helix-turn-helix motif
Pfam	PF02183	5.1E-16	84	125	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009615	Biological Process	response to virus
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MEEGDFFSCF SEINSGMTMN KKKMRKGTNH KRFNEEQIKS LEVIFESETR LEPRKKMQLA 60 RELGLQPRQV AIWFQNKRAR WKSKQLEKEY DILRANYNNL ASQFEIIKKE KQALVSELQR 120 LNEEMRKTKE ERNDECCGEQ RVALSSSTWS DNGKYEPEVR LNQGIVLCND DIKTEYFGFE 180 EESNHELINI VEQADDSGLT SSDNWGNFNS ESFLDQSSSN YPWWDFWS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.11281	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:9617808}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:11374882, ECO:0000269\|PubMed:15604708}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00013	PBM	Transfer from AT3G61890	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00016893001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA), by cold and salt stress. {ECO:0000269\|PubMed:15369784, ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:9617808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT000602	0.0	KT000602.1 Brassica napus note R1 line homeobox-leucine zipper protein (ATHB-12) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013631796.1	1e-167	PREDICTED: homeobox-leucine zipper protein ATHB-12-like
Refseq	XP_022556559.1	1e-167	homeobox-leucine zipper protein ATHB-12-like
Refseq	XP_022556560.1	1e-167	homeobox-leucine zipper protein ATHB-12-like
Swissprot	Q9M276	1e-113	ATB12_ARATH; Homeobox-leucine zipper protein ATHB-12
TrEMBL	A0A078K0U7	1e-167	A0A078K0U7_BRANA; BnaCnng73330D protein
STRING	Bo4g100070.1	1e-166	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2498	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61890.1	1e-116	homeobox 12

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]